NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22460.1 Public Mus musculus 8 Ddx39a 23 108 98 CCDS HistoryNCBI Gene:68278Re-query CCDS DB by CCDS ID:22460.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019576.14 ENSMUSP00000019576.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019576.14Link to Ensembl Protein Viewer:ENSMUSP00000019576.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000019576Re-query CCDS DB by Protein ID:ENSMUSP00000019576
Original member Current member EBI ENSMUST00000109810.1 ENSMUSP00000105435.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109810.1Link to Ensembl Protein Viewer:ENSMUSP00000105435.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109810Re-query CCDS DB by Protein ID:ENSMUSP00000105435
Original member Current member EBI ENSMUST00000172396.7 ENSMUSP00000132222.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172396.7Link to Ensembl Protein Viewer:ENSMUSP00000132222.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000172396Re-query CCDS DB by Protein ID:ENSMUSP00000132222
Original member Current member EBI ENSMUST00000212949.1 ENSMUSP00000148329.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212949.1Link to Ensembl Protein Viewer:ENSMUSP00000148329.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212949Re-query CCDS DB by Protein ID:ENSMUSP00000148329
Original member Current member NCBI NM_001363116.1 NP_001350045.1 Accepted alive Link to Nucleotide Sequence:NM_001363116.1Link to Protein Sequence:NP_001350045.1Re-query CCDS DB by Nucleotide ID:NM_001363116Re-query CCDS DB by Protein ID:NP_001350045Link to BLAST:NP_001350045.1
Original member Current member NCBI NM_197982.3 NP_932099.2 Accepted alive Link to Nucleotide Sequence:NM_197982.3Link to Protein Sequence:NP_932099.2Re-query CCDS DB by Nucleotide ID:NM_197982Re-query CCDS DB by Protein ID:NP_932099Link to BLAST:NP_932099.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350045.1 427 Q8VDW0-1 427 100% 0 0
NP_932099.2 427 Q8VDW0-1 427 100% 0 0

Chromosomal Locations for CCDS 22460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 83719391 83719598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83719812 83719939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83720549 83720641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83720957 83721140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83721734 83721852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83722230 83722361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83722449 83722558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83722649 83722793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83722887 83723034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 83723125 83723141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1284 nt):
ATGGCAGAACAGGATGTGGAAAATGAACTTTTGGATTATGATGAAGATGAAGAGCCCCAGGCACCCCAGG
AGAGCACTCCAGCTCCCCCGAAGAAAGATGTCAAAGGATCTTATGTCTCCATCCACAGTTCTGGCTTCCG
GGACTTTCTACTGAAGCCAGAGCTCCTGAGAGCTATAGTTGACTGTGGCTTTGAGCATCCTTCAGAGGTC
CAGCATGAGTGTATTCCCCAGGCCATTCTGGGTATGGATGTCCTGTGCCAGGCCAAGTCTGGGATGGGCA
AGACAGCTGTGTTTGTGCTGGCCACCCTGCAGCAGATTGAGCCTGTCAATGGCCAGGTATCAGTCCTGGT
CATGTGCCACACGAGGGAGCTGGCCTTCCAGATCAGCAAGGAGTATGAGCGCTTCTCTAAGTACATGCCC
AGTGTTAAGGTTTCTGTGTTCTTTGGAGGCCTCTCCATTAAGAAGGATGAAGATGTGTTGAAGAAGAACT
GTCCTCATGTTGTGGTGGGGACACCAGGCCGGATCCTGGCACTTGTGCGGAGCAGGAGCCTCAACCTGAG
GAATGTGAAGCACTTTGTGCTAGATGAATGTGACAAGATGCTGGAACAGCTGGACATGCGCCGGGATGTA
CAGGAGATCTTTCGTCTGACACCCCACGAGAAGCAGTGTATGATGTTCAGCGCCACCCTGAGCAAGGAGA
TCCGGCCAGTCTGCAGGAAGTTCATGCAGGATCCTATGGAGGTGTTTGTGGACGACGAGACCAAGCTCAC
ACTGCATGGGCTGCAGCAGTATTACGTCAAGCTCAAGGACAGTGAGAAGAACCGTAAGCTCTTCGACCTC
CTCGACGTGCTAGAGTTTAACCAGGTGGTGATCTTTGTCAAGTCTGTGCAACGCTGCATGGCCCTGGCCC
AGCTCCTAGTGGAGCAGAATTTCCCAGCTATCGCTATTCACCGAGGCATGGCCCAGGAGGAGCGCCTGTC
CCGATACCAGCAGTTCAAGGACTTCCAGCGACGAATCCTGGTGGCTACTAATCTGTTTGGCAGAGGTATG
GACATTGAGCGAGTCAACATTGTCTTCAACTATGACATGCCAGAGGACTCAGACACCTACCTTCACCGAG
TGGCTCGTGCTGGTCGCTTTGGTACCAAGGGCCTGGCAGTCACTTTTGTATCGGATGAAAATGATGCCAA
AATCCTTAATGATGTTCAGGACCGGTTTGAAGTGAATGTAGCTGAGCTTCCAGAGGAAATAGATATCTCC
ACATACATTGAGCAGAGCCGGTAA

Translation (427 aa):
MAEQDVENELLDYDEDEEPQAPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEV
QHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMP
SVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDV
QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDL
LDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGM
DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDIS
TYIEQSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH