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Report for CCDS19909.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19909.1 Public Mus musculus 6 Rpa3 23 108 98 CCDS HistoryNCBI Gene:68240Re-query CCDS DB by CCDS ID:19909.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19909.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000012627.4 ENSMUSP00000012627.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000012627.4Link to Ensembl Protein Viewer:ENSMUSP00000012627.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000012627Re-query CCDS DB by Protein ID:ENSMUSP00000012627
Original member Current member NCBI NM_026632.4 NP_080908.1 Accepted alive Link to Nucleotide Sequence:NM_026632.4Link to Protein Sequence:NP_080908.1Re-query CCDS DB by Nucleotide ID:NM_026632Re-query CCDS DB by Protein ID:NP_080908Link to BLAST:NP_080908.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080908.1 121 Q9CQ71 121 100% 0 0

Chromosomal Locations for CCDS 19909.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 8256165 8256247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8256695 8256803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8257687 8257761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 8259000 8259098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (366 nt):
ATGGAGGACATAATGCAGCTCCCCAAAGCGCGCGTCAACGCCAGCATGTTACCACAGTATATCGACCGGC
CCGTGTGCTTCGTGGGGAAGCTGGAAAAGATTCATCCCACTGGAAAAATGTTTATTCTTTCAGATGGAGA
AGGAAAAAATGGAACCATTGAATTGATGGAGCCACTTGACGAGGAAATCTCTGGGATTGTAGAAGTAGTT
GGAAAAGTCACAGCCAAGGCGACCGTGCTCTGTGCATCTTATACCCTGTTTAAGGAAGATACTAATCGCT
TTGATCTTGAACTTTACAATGAAGCTGTGAAAATTATCAATGAGCTTCCTCAGTTTTTCCCTGTAGGGCT
TCCACAACATGAATGA

Translation (121 aa):
MEDIMQLPKARVNASMLPQYIDRPVCFVGKLEKIHPTGKMFILSDGEGKNGTIELMEPLDEEISGIVEVV
GKVTAKATVLCASYTLFKEDTNRFDLELYNEAVKIINELPQFFPVGLPQHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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