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Report for CCDS29894.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29894.1 Public Mus musculus 19 Gsto2 23 108 98 CCDS HistoryNCBI Gene:68214Re-query CCDS DB by CCDS ID:29894.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29894.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056159.10 ENSMUSP00000052592.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056159.10Link to Ensembl Protein Viewer:ENSMUSP00000052592.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000056159Re-query CCDS DB by Protein ID:ENSMUSP00000052592
Original member Current member EBI ENSMUST00000120645.7 ENSMUSP00000113409.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000120645.7Link to Ensembl Protein Viewer:ENSMUSP00000113409.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000120645Re-query CCDS DB by Protein ID:ENSMUSP00000113409
Original member Current member EBI ENSMUST00000135016.2 ENSMUSP00000119680.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000135016.2Link to Ensembl Protein Viewer:ENSMUSP00000119680.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000135016Re-query CCDS DB by Protein ID:ENSMUSP00000119680
Original member Current member NCBI NM_026619.2 NP_080895.2 Accepted alive Link to Nucleotide Sequence:NM_026619.2Link to Protein Sequence:NP_080895.2Re-query CCDS DB by Nucleotide ID:NM_026619Re-query CCDS DB by Protein ID:NP_080895Link to BLAST:NP_080895.2
Original member Current member NCBI NM_030051.1 NP_084327.1 Accepted alive Link to Nucleotide Sequence:NM_030051.1Link to Protein Sequence:NP_084327.1Re-query CCDS DB by Nucleotide ID:NM_030051Re-query CCDS DB by Protein ID:NP_084327Link to BLAST:NP_084327.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080895.2 248 Q8K2Q2 248 100% 0 0
NP_084327.1 248 Q8K2Q2 248 100% 0 0

Chromosomal Locations for CCDS 29894.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 47871770 47871803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47872016 47872124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47874830 47875052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47876396 47876497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47884656 47884762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 47886018 47886189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (747 nt):
ATGTCCGGGGATTTGTCAAGATGCTTGGGAAAAGGAAGCTGTCCCCCAGGGCCGGTCCCTGAGGGTGTGA
TCCGAATCTACAGCATGAGGTTCTGCCCCTACTCGCACAGGGCACGCCTGGTTCTCAAGGCCAAAGGCAT
CAGGCATGAAGTGATCAATATTAACCTGAAAAGCAAGCCTGACTGGTACTATACAAAGCATCCTTTTGGC
CAAATTCCTGTCTTGGAGAACAGCCAGTGTCAGCTGGTCTATGAATCTGTCATTGCTTGTGAGTACCTGG
ATGACGTCTACCCGGGAAGAAAGCTGTTTCCGTATGACCCGTATGAACGAGCTCGCCAGAAGATGTTATT
GGAGCTATTCTGTAAGGTCCCGCCTTTAAGCAAGGAATGTCTGATAGCGCTGAGATGCGGAAGAGACTGT
ACGGATCTGAAGGTCGCCCTGCGTCAGGAGTTGTGCAACATGGAAGAGATTCTTGAATATCAGAACACTA
CCTTCTTCGGCGGAGACTGTATATCCATGATTGATTACCTCGTCTGGCCCTGGTTTGAGCGCCTGGACGT
ATATGGACTGGCTGACTGCGTGAATCACACCCCGATGCTGCGGCTCTGGATAGCCTCCATGAAGCAGGAC
CCTGCAGTGTGTGCTCTGCACACTGATAAGAGCGTCTTCCTGGGCTTCTTGAATCTCTATTTCCAAAACA
ACCCTTGTGCCTTTGATTTTGGGCTGTGTAACCCAATCATACGATAA

Translation (248 aa):
MSGDLSRCLGKGSCPPGPVPEGVIRIYSMRFCPYSHRARLVLKAKGIRHEVININLKSKPDWYYTKHPFG
QIPVLENSQCQLVYESVIACEYLDDVYPGRKLFPYDPYERARQKMLLELFCKVPPLSKECLIALRCGRDC
TDLKVALRQELCNMEEILEYQNTTFFGGDCISMIDYLVWPWFERLDVYGLADCVNHTPMLRLWIASMKQD
PAVCALHTDKSVFLGFLNLYFQNNPCAFDFGLCNPIIR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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