NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS22236.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22236.1 Public Mus musculus 8 Gtf2e2 23 108 98 CCDS HistoryNCBI Gene:68153Re-query CCDS DB by CCDS ID:22236.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22236.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170705.7 ENSMUSP00000126284.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170705.7Link to Ensembl Protein Viewer:ENSMUSP00000126284.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170705Re-query CCDS DB by Protein ID:ENSMUSP00000126284
Original member Current member EBI ENSMUST00000167264.7 ENSMUSP00000129834.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167264.7Link to Ensembl Protein Viewer:ENSMUSP00000129834.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167264Re-query CCDS DB by Protein ID:ENSMUSP00000129834
Original member Current member EBI ENSMUST00000171010.7 ENSMUSP00000132287.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171010.7Link to Ensembl Protein Viewer:ENSMUSP00000132287.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171010Re-query CCDS DB by Protein ID:ENSMUSP00000132287
Original member Current member NCBI NM_001167921.1 NP_001161393.1 Accepted alive Link to Nucleotide Sequence:NM_001167921.1Link to Protein Sequence:NP_001161393.1Re-query CCDS DB by Nucleotide ID:NM_001167921Re-query CCDS DB by Protein ID:NP_001161393Link to BLAST:NP_001161393.1
Original member Current member NCBI NM_001167922.1 NP_001161394.1 Accepted alive Link to Nucleotide Sequence:NM_001167922.1Link to Protein Sequence:NP_001161394.1Re-query CCDS DB by Nucleotide ID:NM_001167922Re-query CCDS DB by Protein ID:NP_001161394Link to BLAST:NP_001161394.1
Original member Current member NCBI NM_026584.3 NP_080860.3 Accepted alive Link to Nucleotide Sequence:NM_026584.3Link to Protein Sequence:NP_080860.3Re-query CCDS DB by Nucleotide ID:NM_026584Re-query CCDS DB by Protein ID:NP_080860Link to BLAST:NP_080860.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161393.1 292 Q9D902 292 100% 0 0
NP_001161394.1 292 Q9D902 292 100% 0 0
NP_080860.3 292 Q9D902 292 100% 0 0

Chromosomal Locations for CCDS 22236.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 33735738 33735906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33752441 33752532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33755852 33755959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33758556 33758738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33762010 33762103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33775944 33776059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 33776453 33776569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGATCCAAGCCTATTGAGAGATCGAGAGCTGTTCAAAAAACGAGCTCTTTCCACTCCTGTGGTAGAAA
AACGTGCTGTGCCTTCTGAGTCACCCTCCTCCTCCTCATCCAAGAAGAAGAAGGCAAAAGTCGAACATGG
AGGATCCTCAGGCTCTAAACAAAATTCAGATCATAACAATGGATCATTTAACTTGAAAGCTCTGTCTGGA
AGCTCTGGATATAAGTTCGGTGTTCTTGCTAAGATTGTGAATTATATGAAAACACGACATCAGCGGGGAG
ATACACATCCTCTAACGTTGGAAGAGATTCTGGATGAGACACAGCACTTAGACATCGGACTCAAGCAGAA
ACAGTGGCTGATGACGGAGGCTTTAGTCAACAATCCTAAAATTGAAGTAGTGGATGGGAAATATGCCTTC
AAACCTAAGTACAACTTGAAAGATAAGAAGGCCCTGCTTAGGCTTTTAGACAATCATGACCAGCGGGGAC
TAGGAGGAATTCTCTTAGAAGACATAGAAGAGGGACTGCCTAATTCCCAGAAAGCTGTCAAGGCTTTAGG
GGACCAGATACTATTTGTAAGTCGTCCTGATAAGAAGAAAATACTATTCTTCAATGATAAAAGCTGTCAG
TTTTCTGTGGATGAAGAATTCCAGAAACTGTGGAGGAGTGTCACTGTGGATTCAATGGATGAGGAGAAAA
TTGAAGAGTATCTGAAGCGACAGGGTATTTCTTCCATGCAGGAATCTGGACCAAAGAAAGTGGCCTCTAT
TCAGAGAAGGAAAAAGCCTGCTTCACAGAAAAAGCGACGGTTTAAGACTCACAATGAACACTTGGCTGGA
GTGCTGAAGGATTACTCGGACATTACCCCGGGCAAATAG

Translation (292 aa):
MDPSLLRDRELFKKRALSTPVVEKRAVPSESPSSSSSKKKKAKVEHGGSSGSKQNSDHNNGSFNLKALSG
SSGYKFGVLAKIVNYMKTRHQRGDTHPLTLEEILDETQHLDIGLKQKQWLMTEALVNNPKIEVVDGKYAF
KPKYNLKDKKALLRLLDNHDQRGLGGILLEDIEEGLPNSQKAVKALGDQILFVSRPDKKKILFFNDKSCQ
FSVDEEFQKLWRSVTVDSMDEEKIEEYLKRQGISSMQESGPKKVASIQRRKKPASQKKRRFKTHNEHLAG
VLKDYSDITPGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH