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Report for CCDS38684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38684.1 Public Mus musculus 3 Wls 23 108 98 CCDS HistoryNCBI Gene:68151Re-query CCDS DB by CCDS ID:38684.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068952.9 ENSMUSP00000067898.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068952.9Link to Ensembl Protein Viewer:ENSMUSP00000067898.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000068952Re-query CCDS DB by Protein ID:ENSMUSP00000067898
Original member Current member EBI ENSMUST00000198878.1 ENSMUSP00000143475.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000198878.1Link to Ensembl Protein Viewer:ENSMUSP00000143475.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000198878Re-query CCDS DB by Protein ID:ENSMUSP00000143475
Original member Current member NCBI NM_001356350.1 NP_001343279.1 Accepted alive Link to Nucleotide Sequence:NM_001356350.1Link to Protein Sequence:NP_001343279.1Re-query CCDS DB by Nucleotide ID:NM_001356350Re-query CCDS DB by Protein ID:NP_001343279Link to BLAST:NP_001343279.1
Original member Current member NCBI NM_026582.5 NP_080858.3 Accepted alive Link to Nucleotide Sequence:NM_026582.5Link to Protein Sequence:NP_080858.3Re-query CCDS DB by Nucleotide ID:NM_026582Re-query CCDS DB by Protein ID:NP_080858Link to BLAST:NP_080858.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343279.1 541 Q6DID7-1 541 100% 0 0
NP_080858.3 541 Q6DID7-1 541 100% 0 0

Chromosomal Locations for CCDS 38684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 159839942 159840047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159872909 159873181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159897331 159897455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159901382 159901543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159907115 159907251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159909653 159909821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159911298 159911395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159911760 159911823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159913761 159913904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159914936 159915019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159923427 159923580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 159934251 159934360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1626 nt):
ATGGCTGGGGCAATTATAGAAAACATGAGTACCAAGAAGCTCTGCATTGTTGGAGGGATTCTTCTGGTTT
TCCAAATCGTTGCCTTTCTGGTGGGAGGCTTGATCGCTCCAGCACCCACAACAGCAGTACCCTACACGGC
AATAAAATGTGTGGATGTCCGTAAGAACCACCATAAAACAAGATGGCTGGCGCCTTGGGGACCTAACAAG
TGTGACAAGATCCGTGACATCGAGGAAGCAATTCCAAGGGAAATTGAAGCAAATGACATTGTGTTTTCTG
TACACATTCCCCTCCCTTCTATGGAGATGAGTCCATGGTTCCAGTTTATGCTGTTTATCTTGCAGCTAGA
CATTGCTTTCAAGCTGAACAACCAAATCAGAGAAAATGCAGAAATTTCCATGGATGTTTCCCTGGGTTAC
CGTGATGATATGTTTTCTGAATGGACTGAAATGGCCCATGAAAGAGTACCACGTAAACTCAAATGTACTT
TTACATCCCCCAAGACCCCAGAGCACGAAGGTCGTTATTATAATTGTGATGTCCTTCCTTTCATGGAAAT
TGGGTCAGTGGCTCATAAGTATTACCTTCTAAATATCCGGCTACCTGTAAATGAGAAAAAGAAAATCAAT
GTTGGAATTGGGGAGATAAAGGACATTCGGTTGGTGGGAATCCACCAAAACGGAGGTTTCACTAAGGTAT
GGTTTGCTATGAAGACCTTCCTTACACCCAGCATCTTCATCATTATGGTGTGGTATTGGAGGAGGATCAC
CATGATGTCCCGACCTCCAGTGCTTCTGGAAAAAGTCATCTTTGCCCTTGGGATTTCCATGACCTTTATC
AATATCCCTGTGGAATGGTTTTCTATTGGATTTGACTGGACCTGGATGCTGTTATTTGGTGACATCCGAC
AGGGCATCTTCTATGCAATGCTTCTTTCTTTCTGGATCATCTTCTGTGGCGAGCACATGATGGATCAACA
TGAACGGAATCACATTGCAGGGTACTGGAAGCAAGTTGGACCAATTGCTGTTGGCTCCTTCTGCCTCTTC
ATATTTGACATGTGTGAAAGAGGAGTACAACTCACAAATCCTTTCTACAGTATCTGGACTACAGATGTTG
GAACAGAACTGGCTATGGCTTTCATCATTGTGGCAGGTATCTGCCTCTGCCTCTATTTCCTGTTTCTGTG
CTTCATGGTATTTCAGGTATTTAGAAACATCAGTGGGAAGCAGTCTAGCCTCCCAGCCATGAGCAAAGTC
CGGAGGCTGCACTATGAGGGTCTGATCTTCAGGTTCAAGTTCCTCATGCTTATCACCTTGGCTTGTGCTG
CCATGACTGTTATCTTCTTCATCGTTAGTCAGGTGTCAGAAGGCCATTGGAAATGGGGTGGTGTCACAGT
TCAAGTGAGCAGTGCTTTCTTCACTGGAATCTATGGGATGTGGAACCTGTATGTCTTTGCTTTGATGTTC
TTGTATGCACCATCCCATAAGAACTATGGGGAAGACCAGTCTAATGGTGACCTGGGTGTCCACAGCGGGG
AAGAACTGCAGCTTACTACCACTATAACCCATGTAGATGGACCAACTGAGATCTACAAGTTGACCCGTAA
AGAAGCACAGGAATAG

Translation (541 aa):
MAGAIIENMSTKKLCIVGGILLVFQIVAFLVGGLIAPAPTTAVPYTAIKCVDVRKNHHKTRWLAPWGPNK
CDKIRDIEEAIPREIEANDIVFSVHIPLPSMEMSPWFQFMLFILQLDIAFKLNNQIRENAEISMDVSLGY
RDDMFSEWTEMAHERVPRKLKCTFTSPKTPEHEGRYYNCDVLPFMEIGSVAHKYYLLNIRLPVNEKKKIN
VGIGEIKDIRLVGIHQNGGFTKVWFAMKTFLTPSIFIIMVWYWRRITMMSRPPVLLEKVIFALGISMTFI
NIPVEWFSIGFDWTWMLLFGDIRQGIFYAMLLSFWIIFCGEHMMDQHERNHIAGYWKQVGPIAVGSFCLF
IFDMCERGVQLTNPFYSIWTTDVGTELAMAFIIVAGICLCLYFLFLCFMVFQVFRNISGKQSSLPAMSKV
RRLHYEGLIFRFKFLMLITLACAAMTVIFFIVSQVSEGHWKWGGVTVQVSSAFFTGIYGMWNLYVFALMF
LYAPSHKNYGEDQSNGDLGVHSGEELQLTTTITHVDGPTEIYKLTRKEAQE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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