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Report for CCDS38477.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38477.1 Public Mus musculus 3 Mrpl24 23 108 98 CCDS HistoryNCBI Gene:67707Re-query CCDS DB by CCDS ID:38477.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 38477.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019854.12 ENSMUSP00000019854.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019854.12Link to Ensembl Protein Viewer:ENSMUSP00000019854.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000019854Re-query CCDS DB by Protein ID:ENSMUSP00000019854
Original member Current member EBI ENSMUST00000121920.7 ENSMUSP00000112885.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121920.7Link to Ensembl Protein Viewer:ENSMUSP00000112885.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121920Re-query CCDS DB by Protein ID:ENSMUSP00000112885
Original member Current member EBI ENSMUST00000121048.1 ENSMUSP00000113959.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121048.1Link to Ensembl Protein Viewer:ENSMUSP00000113959.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000121048Re-query CCDS DB by Protein ID:ENSMUSP00000113959
Original member Current member EBI ENSMUST00000119968.7 ENSMUSP00000114111.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119968.7Link to Ensembl Protein Viewer:ENSMUSP00000114111.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119968Re-query CCDS DB by Protein ID:ENSMUSP00000114111
Original member Current member NCBI NM_026591.3 NP_080867.2 Accepted alive Link to Nucleotide Sequence:NM_026591.3Link to Protein Sequence:NP_080867.2Re-query CCDS DB by Nucleotide ID:NM_026591Re-query CCDS DB by Protein ID:NP_080867Link to BLAST:NP_080867.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080867.2 216 Q9CQ06 216 100% 0 0

Chromosomal Locations for CCDS 38477.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 87921866 87922048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87922131 87922226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87922388 87922491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87922935 87923065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 87923210 87923346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (651 nt):
ATGCGGCTCTCAGCCCTGCTGGCCTTGGCATCCAAAGCCACTTCCTCCCCCTTCTACCGCTATGGAATGA
GCCGTCCAGGTTCCATAGCAGACAAAAGGAAGAATCCTCCATGGAGCAGGCGGCGCCCAGTAGTGGTAGA
GCCCATCTCTGATGAAGACTGGCACCTATTCTGTGGAGACATGGTAGAAATCTTAGAAGGCAAGGATGCT
GGGAAGCAAGGCAAAGTAGTCCAAGTCGTTCGGCAGCGAAACTGGGTTGTCCTGGAGGGGTTGAACACGC
ATTACCGATACATTGGCAGAACCAAGGACCACCGAGGGACCATGATCGCTAGTGAAGCCCCCTTGCTTCA
TCACCAGGTCAAGCTAGTGGATCCTGTGGACAGGAAACCCACTGAGATCCAGTGGAGATTTACTGAGGCA
GGAGAACGTGTTCGAGTCTCTACAAGATCTGGCAGAATTATCCCCAAACCTGAATTTCCTAGAGCAGATG
GCATTGTCCCTGAAACATGGACTGATGGCCCCAAGGACACATCAGTGGAAGATGCTCTTGAAAGAACTTA
TGTGCCCCGACTAAAGACATTAGAAGAAGATGTGATGGAGGCCATGGGGATCCAGGAGACTCGAAGATTC
AAGAAAGTTTATTGGTATTGA

Translation (216 aa):
MRLSALLALASKATSSPFYRYGMSRPGSIADKRKNPPWSRRRPVVVEPISDEDWHLFCGDMVEILEGKDA
GKQGKVVQVVRQRNWVVLEGLNTHYRYIGRTKDHRGTMIASEAPLLHHQVKLVDPVDRKPTEIQWRFTEA
GERVRVSTRSGRIIPKPEFPRADGIVPETWTDGPKDTSVEDALERTYVPRLKTLEEDVMEAMGIQETRRF
KKVYWY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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