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Report for CCDS18623.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18623.1 Public Mus musculus 4 Utp11 23 108 98 CCDS HistoryNCBI Gene:67205Re-query CCDS DB by CCDS ID:18623.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18623.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030738.7 ENSMUSP00000030738.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030738.7Link to Ensembl Protein Viewer:ENSMUSP00000030738.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030738Re-query CCDS DB by Protein ID:ENSMUSP00000030738
Original member NCBI NM_026031.3 NP_080307.1 Updated not alive Link to Nucleotide Sequence:NM_026031.3Link to Protein Sequence:NP_080307.1Re-query CCDS DB by Nucleotide ID:NM_026031Re-query CCDS DB by Protein ID:NP_080307
Current member NCBI NM_026031.4 NP_080307.1 Accepted alive Link to Nucleotide Sequence:NM_026031.4Link to Protein Sequence:NP_080307.1Re-query CCDS DB by Nucleotide ID:NM_026031Re-query CCDS DB by Protein ID:NP_080307Link to BLAST:NP_080307.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080307.1 253 Q9CZJ1 253 100% 0 0

Chromosomal Locations for CCDS 18623.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 124678903 124678986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124679702 124679812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124682193 124682323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124682413 124682506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124683235 124683348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124683753 124683855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124686089 124686150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 124693440 124693502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGTCGGCGGCTTTTCGCAAGGCAGCCAAGACCCGGCAGCGGGAACACCGAGAACGAAGCCAGCCTGGCT
TTCGAAAACGCCTGGGTTTGCTGGAGAAAAAGAAAGATTACAAACTTCGTGCAAATGACTATCATAAAAA
ACAAGATTTCCTCAGAGCTCTCCGGAAGAAGGCTCTTGAAAAAAACCCAGATGAATTCTACTATAAAATG
ACTCGGGCCAAGCTCCAGGATGGAGTTCACATTTTCAAAGAGAACAAGGAAGAAGTGACAGCAGAGCAGC
TGAAGCTCATGAGAACTCAGGACATCAAGTACATTGAGATGAAAAGAGTTGCAGAGGCGAAGAAAATTGA
AAGATTGAAATCAGAGCTCCATCTGCTGGATTTCCAGGGGAAGCAACAGAAGAAGCACGTGTTCTTTTTT
GACACCAAAAAGGAAGTTGAACGGTTTGATGTTGCAACTCACTTGCAGACGGCCCCAGAATTAGTTGACA
GGGTCTACAATAGACCCCGGATAGAGACCTTACAGAAGGAGAGAGTGAAAGGAGCCACCCCTCAGACTGG
ACTCAAGCGGATAGCCAAGGAACGACAGAAGCAGTATGACTGTTTGACGCAGCGCATCGAGCGGGAGAAG
CAGCTGTTCGTTGTTGCCCAGAAAATCCAGACACGCAAAGACCTCATGGATAAAACTCAGAAGGTGAAGG
TGAAGAAAGAAACAGTGAACTCCCCAGCTATTTACAGATTCCAGACTCGCCGAAAACGTTGA

Translation (253 aa):
MSAAFRKAAKTRQREHRERSQPGFRKRLGLLEKKKDYKLRANDYHKKQDFLRALRKKALEKNPDEFYYKM
TRAKLQDGVHIFKENKEEVTAEQLKLMRTQDIKYIEMKRVAEAKKIERLKSELHLLDFQGKQQKKHVFFF
DTKKEVERFDVATHLQTAPELVDRVYNRPRIETLQKERVKGATPQTGLKRIAKERQKQYDCLTQRIEREK
QLFVVAQKIQTRKDLMDKTQKVKVKKETVNSPAIYRFQTRRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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