NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS48925.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48925.1 Public Mus musculus 11 Krtap31-3 23 108 98 CCDS HistoryNCBI Gene:670550Re-query CCDS DB by CCDS ID:48925.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48925.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105053.1 ENSMUSP00000100674.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105053.1Link to Ensembl Protein Viewer:ENSMUSP00000100674.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105053Re-query CCDS DB by Protein ID:ENSMUSP00000100674
Original member Current member NCBI NM_001126323.1 NP_001119795.1 Accepted alive Link to Nucleotide Sequence:NM_001126323.1Link to Protein Sequence:NP_001119795.1Re-query CCDS DB by Nucleotide ID:NM_001126323Re-query CCDS DB by Protein ID:NP_001119795Link to BLAST:NP_001119795.1

Chromosomal Locations for CCDS 48925.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 99914784 99915254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGACCCACACCTGTCAGCCATGCTGCTGCAAGATCACCTCCTGCAAGACCACCAGCAGCTCTGAATCCA
ACTCTGAATCCAGCTGCCCTGTGTTCATCTGCTGCGCCCCTAGTTGGTGCAGCATACCCTGTTGTTGCAA
GTCTACCTGCTGCCACAGCACCAAGACTGTCAACAGCAGCCCCCAGCTGTGCTGTCCACCAACCTGCTGT
GACACTTCCTCCTGTGACAGCAACTGCTGCAAGCCAACCTGTGTGACCATCTGCTGTGTGCCCAGCTGCT
GCCAGCCTAGACTCTTCCAGCTCTGCTGCCAACCAACTTGCTGTGAAACCAGCTGCTGCAAGACCACCTC
TTTTAAACCCACCTGTGTGATCATTGGCTGCAGCACACCCTGCTGCCAGCCCTGCTGTGTGTGCCCACCT
GCCGCTGATGACCAGCTCCCAAAAAAGGCCTGCAAAGCCATGCTCCTGTGA

Translation (156 aa):
MTHTCQPCCCKITSCKTTSSSESNSESSCPVFICCAPSWCSIPCCCKSTCCHSTKTVNSSPQLCCPPTCC
DTSSCDSNCCKPTCVTICCVPSCCQPRLFQLCCQPTCCETSCCKTTSFKPTCVIIGCSTPCCQPCCVCPP
AADDQLPKKACKAMLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH