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Report for CCDS37610.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37610.2 Public Mus musculus 17 H2-T26 23 108 98 CCDS HistoryNCBI Gene:667977Re-query CCDS DB by CCDS ID:37610.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 37610.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 37610.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040467.14 ENSMUSP00000036092.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040467.14Link to Ensembl Protein Viewer:ENSMUSP00000036092.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040467Re-query CCDS DB by Protein ID:ENSMUSP00000036092
Original member NCBI NM_001081032.2 NP_001074501.2 Updated not alive Link to Nucleotide Sequence:NM_001081032.2Link to Protein Sequence:NP_001074501.2Re-query CCDS DB by Nucleotide ID:NM_001081032Re-query CCDS DB by Protein ID:NP_001074501
Current member NCBI NM_001081032.3 NP_001074501.2 Accepted alive Link to Nucleotide Sequence:NM_001081032.3Link to Protein Sequence:NP_001074501.2Re-query CCDS DB by Nucleotide ID:NM_001081032Re-query CCDS DB by Protein ID:NP_001074501Link to BLAST:NP_001074501.2

Chromosomal Locations for CCDS 37610.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 36164664 36164676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36164977 36165022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36165145 36165177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36165356 36165472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36165599 36165874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36167433 36167708 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36167926 36168207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 36168444 36168507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGCACCGCGAACGCTGCTCCTGCTGCTGGCCGCTGCCCTGATACTGACGGAGACACGCGCGGTGTCCC
GGCCCGGCCCACACTCGATGCGGTATTTCGAGACCGCCGTGTCCCGGCCCGGCCTCGGGGAGCCCTGGTT
CATCTCTGTCGGCTACGTGGACGACACGCAGTTCGTGCGCTTCGACGGCGACGCGGAGAATCCGAGGATG
GAGCCGCGGGCGCCCTGGATGGAGCAGGAGGGGCCGGAGTATTGGGAGCGGGAGACACAGATCGCCAAGG
GCCATGAGCAGGGTTTCCAAGGGAGCCTGAGGAACCTGCTCCACTACTACAACCAGAGCGCGGGCGGCTC
TCACACATTTCAGAGGATGTACGGCTGTGACCTGGGGTCGGACGGGCGCCTCCTCCGCGGGTACTGGCAG
TTCGCTTACGACGGCAGCGATTACATCGCCCTGAACCAAGACCTGAAAACGTGGACGGCGGCGGACTTGG
CGGCGCAGATCACTCGACGCAGGTGGGAGCAGGGTGGTGTTGCAGAGACGCTCAGGGCCTACCTGGAGGA
CCCGTGCCTGGAGTGGCTCCGCAGATACCTGGAGCTCGGGAAGGAGACGCTGCTGCGCACAGATCCCCCA
AAGGTACATGTGACCCATCATCCCAGATCTGAAGATGATGTCACCCTGAGGTGCTGGGCCCTGGGTTTCT
ACCCTGCTGACATCACCCTGACCTGGCAGTTGAATGGGGAGGAGCTGACCCAGGACATGGAGCTTGTGGA
GACCAGGCCTGCAGGGGATGGAACCTTCCAGAAGTGGGCATCTGTGGTGGTGCCTCTTGGAAAGGAGCAG
AATTACACATGCCATGTGTACCATGAGGGGCTGCCTGAGCCCCTCACCCTGAGATGGGAGCCTCGTCCAT
CCAGGGACTCCAACATGGTAATCATAGCTGTTCTGGTTGTCCTTGGAGTTGTGATCATCATTGGAGCTAT
GGTGCCTTTTGTGTTGAAGAGCAGGAGAAAAATAGGTGGAAAAGAAGAGAACTATGCTCTGGCTGGAGGC
AGCAACAGTGTCCAGGGCTCTGCCTTGTTTCTGGAGGCCTTCAGCCATCCTTCCTGA

Translation (368 aa):
MAPRTLLLLLAAALILTETRAVSRPGPHSMRYFETAVSRPGLGEPWFISVGYVDDTQFVRFDGDAENPRM
EPRAPWMEQEGPEYWERETQIAKGHEQGFQGSLRNLLHYYNQSAGGSHTFQRMYGCDLGSDGRLLRGYWQ
FAYDGSDYIALNQDLKTWTAADLAAQITRRRWEQGGVAETLRAYLEDPCLEWLRRYLELGKETLLRTDPP
KVHVTHHPRSEDDVTLRCWALGFYPADITLTWQLNGEELTQDMELVETRPAGDGTFQKWASVVVPLGKEQ
NYTCHVYHEGLPEPLTLRWEPRPSRDSNMVIIAVLVVLGVVIIIGAMVPFVLKSRRKIGGKEENYALAGG
SNSVQGSALFLEAFSHPS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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