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Report for CCDS38602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38602.1 Public Mus musculus 3 Henmt1 23 108 98 CCDS HistoryNCBI Gene:66715Re-query CCDS DB by CCDS ID:38602.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38602.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000059946.10 ENSMUSP00000054829.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000059946.10Link to Ensembl Protein Viewer:ENSMUSP00000054829.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000059946Re-query CCDS DB by Protein ID:ENSMUSP00000054829
Original member Current member EBI ENSMUST00000106586.6 ENSMUSP00000102196.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106586.6Link to Ensembl Protein Viewer:ENSMUSP00000102196.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106586Re-query CCDS DB by Protein ID:ENSMUSP00000102196
Original member Current member NCBI NM_001078646.1 NP_001072114.1 Accepted alive Link to Nucleotide Sequence:NM_001078646.1Link to Protein Sequence:NP_001072114.1Re-query CCDS DB by Nucleotide ID:NM_001078646Re-query CCDS DB by Protein ID:NP_001072114Link to BLAST:NP_001072114.1
Original member Current member NCBI NM_025723.2 NP_079999.2 Accepted alive Link to Nucleotide Sequence:NM_025723.2Link to Protein Sequence:NP_079999.2Re-query CCDS DB by Nucleotide ID:NM_025723Re-query CCDS DB by Protein ID:NP_079999Link to BLAST:NP_079999.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001072114.1 395 Q8CAE2-1 395 100% 0 0
NP_079999.2 395 Q8CAE2-1 395 100% 0 0

Chromosomal Locations for CCDS 38602.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108941393 108941416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108942727 108942855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108952811 108952923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108953800 108953934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108957615 108957794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108958542 108958719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108959910 108960338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGAAATGGCAGAAAGCATACCGTGCAATAGTGTGGTTGGTGGCAATTTTAAAGAAGTTAGTCCAGAGA
AGGTAATTCGGTTCAAACCACCATTATACAAACAACGGTATCAGTTTGTTAGAGATTTAGTGGATCGCCA
TGAACCCAAGAAGGTTGCCGACCTGGGATGTGGAGATGCCAAGCTCCTAAAGCTGCTAAAAATCTACCCA
TGCATTCAACTGCTTGTTGGGGTGGATATCAATGAAGAAAAATTGCATTCAAATGGGCATCGCTTGTCTC
CCTATTTGGGGGAGTTTGTAAAACCCCGAGATCTAGATTTGACTGTCACCTTGTATCATGGCTCTGTTGT
GGAGAGAGACTCCCGCTTGCTTGGATTCGATTTGATAACATGCATTGAATTAATAGAACACTTGGATTCA
GATGATCTGGCCAGATTTCCTGATGTGGTTTTTGGATACCTGTCACCAGCCATGGTTGTCATCAGCACCC
CAAATGCTGAATTCAACCCCCTGTTTCCTACAGTCACCCTGAGGGACGCCGACCATAAATTTGAGTGGAG
CAGAATGGAGTTTCAGACCTGGGCTTTACACGTGGCAAACTGCTACAATTACCGTGTGGAGTTTACTGGG
GTAGGGACACCGCCAGCTGGATCTGAGCATGTTGGATATTGTACCCAGATAGGTGTCTTTACAAAGAATG
GCGGGAAGCTCTCTAAACCTTCGGTTTCCCAGCAGTGTGACCAGCACGTTTATAAACCTGTTTATACAAC
CTCCTACCCGAGTTTACAGCAGGAGAAGGTGCTCAAGTTTGTTCTGGTTGGGGAACTCCTGATACAAGTG
GACCGACTGAGGCTGAGATACCAGAGAATGCTGCGGGACCGGGAGAAGGACCGGGGCCCTAAGCCAGGGG
ACATGGACTCCTGCCCAGCCCCACACCTACTGTTGGGAGCAGTCTTCACGGAGGCTGAAAAGGCCAGGAT
AGAAAGTTCTCCCAAACCCTTCTGTGAAGGAGAGAAGTTTTACATACCCCTGCAGAGACTGCTCACTTAC
CCCAAACTGCACCGCCTGTGTGCTGATGAGGACAGGGTGCGGTCCCTCATTGCTGACTCGGTTTGCTTAA
GCAGTGATGGCTCCGCAGTCGTGGTTGACCTGCATAATTCTTGGGATTATCGGCCGGAAGAGAACTGA

Translation (395 aa):
MEMAESIPCNSVVGGNFKEVSPEKVIRFKPPLYKQRYQFVRDLVDRHEPKKVADLGCGDAKLLKLLKIYP
CIQLLVGVDINEEKLHSNGHRLSPYLGEFVKPRDLDLTVTLYHGSVVERDSRLLGFDLITCIELIEHLDS
DDLARFPDVVFGYLSPAMVVISTPNAEFNPLFPTVTLRDADHKFEWSRMEFQTWALHVANCYNYRVEFTG
VGTPPAGSEHVGYCTQIGVFTKNGGKLSKPSVSQQCDQHVYKPVYTTSYPSLQQEKVLKFVLVGELLIQV
DRLRLRYQRMLRDREKDRGPKPGDMDSCPAPHLLLGAVFTEAEKARIESSPKPFCEGEKFYIPLQRLLTY
PKLHRLCADEDRVRSLIADSVCLSSDGSAVVVDLHNSWDYRPEEN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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