NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS57419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57419.1 Public Mus musculus 6 Clec2l 23 108 98 CCDS HistoryNCBI Gene:665180Re-query CCDS DB by CCDS ID:57419.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114874.4 ENSMUSP00000110524.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114874.4Link to Ensembl Protein Viewer:ENSMUSP00000110524.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114874Re-query CCDS DB by Protein ID:ENSMUSP00000110524
Original member Current member NCBI NM_001101507.1 NP_001094977.1 Accepted alive Link to Nucleotide Sequence:NM_001101507.1Link to Protein Sequence:NP_001094977.1Re-query CCDS DB by Nucleotide ID:NM_001101507Re-query CCDS DB by Protein ID:NP_001094977Link to BLAST:NP_001094977.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094977.1 211 P0C7M9 211 100% 0 0

Chromosomal Locations for CCDS 57419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 38663236 38663416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38673443 38673517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38676797 38676963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38677509 38677609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 38680128 38680239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (636 nt):
ATGGAGCCGGCCCGGGAGCCCCCCGCGCGCGCCCGCCCGCCGCCCCCCGCAGCTCGTCCCGCGCCCGCTG
CGCCCAGGCCGCGCTCTCCAGCGGAGGCAGAGGCCCGTGGCCCAGAGGGGCTGCTGAGGCGATCCGGGTC
AGGCTACGAGGGCAGCACCAGCTGGAAGGCGGCCTTGGAGGATACCACCACACGCCTTCTGCTGGGAGCC
ATTGCAGTCCTCCTGTTTGCCATTCTGGTGGTGATGAGCATCCTGGCTTCCAAGGGCTGCATCAAGTGTG
AGACACCCTGCCCGGAGGACTGGCTGCTCTACGGAAGGAAATGCTACTACTTCTCGGAGGAACCTAGGGA
CTGGAATACGGGAAGGCAGTACTGCCATACACACGAGGCGGCGCTGGCCGTGATCCAAAGCCAGAAGGAA
CTGGAATTTATGTTCAAGTTCACACGGAGGGAGCCCTGGATCGGCCTGCGCAGAGTTGGGGACGACTTCC
ACTGGGTCAATGGGGACCCGTTTGACCCAGACACATTCACTATCTCGGGTATGGGGGAATGTGTCTTTGT
GGAGCCCACCAGGCTGGTGTCAACGGAATGTCTGACAACCCGTCCCTGGGTGTGCAGCAAGATGGCCTAT
ACGTGA

Translation (211 aa):
MEPAREPPARARPPPPAARPAPAAPRPRSPAEAEARGPEGLLRRSGSGYEGSTSWKAALEDTTTRLLLGA
IAVLLFAILVVMSILASKGCIKCETPCPEDWLLYGRKCYYFSEEPRDWNTGRQYCHTHEAALAVIQSQKE
LEFMFKFTRREPWIGLRRVGDDFHWVNGDPFDPDTFTISGMGECVFVEPTRLVSTECLTTRPWVCSKMAY
T


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH