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Report for CCDS49752.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49752.1 Public Mus musculus 16 Sec14l5 23 108 98 CCDS HistoryNCBI Gene:665119Re-query CCDS DB by CCDS ID:49752.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49752.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000165810.1 ENSMUSP00000128063.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000165810.1Link to Ensembl Protein Viewer:ENSMUSP00000128063.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000165810Re-query CCDS DB by Protein ID:ENSMUSP00000128063
Original member Current member EBI ENSMUST00000230616.1 ENSMUSP00000155164.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000230616.1Link to Ensembl Protein Viewer:ENSMUSP00000155164.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000230616Re-query CCDS DB by Protein ID:ENSMUSP00000155164
Original member NCBI NM_001127725.1 NP_001121197.1 Updated not alive Link to Nucleotide Sequence:NM_001127725.1Link to Protein Sequence:NP_001121197.1Re-query CCDS DB by Nucleotide ID:NM_001127725Re-query CCDS DB by Protein ID:NP_001121197
Current member NCBI NM_001127725.2 NP_001121197.1 Accepted alive Link to Nucleotide Sequence:NM_001127725.2Link to Protein Sequence:NP_001121197.1Re-query CCDS DB by Nucleotide ID:NM_001127725Re-query CCDS DB by Protein ID:NP_001121197Link to BLAST:NP_001121197.1

Chromosomal Locations for CCDS 49752.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 5147786 5147848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5165589 5165738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5167005 5167136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5167875 5168003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5168824 5169016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5171861 5171973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5172977 5173166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5176049 5176137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5176227 5176297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5176474 5176645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5178494 5178628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5180216 5180350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5180670 5180897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5182005 5182183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 5183639 5183750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGTGCAAAAATATCAGTCTCCTGTCCGAGTATACAAGTATCCATTCGAGCTGGTCATGGCGGCCTACG
AGAAGCGCTTCCCCACCTGCCCGCTTATCCCAGTCTTTCTGGGGAGTGAAGTCCTGGGCGAGTGGCGGAG
CACAGATGGGGCAGTGCACACCGTGGAGCGGAGCTGCAGGCTGCGAGTGGATGCCCCGCGGCTGCTGCGG
AAGATTGCTGGTGTGGAGCACGTGGTCTTCATTCAGAGAAACGTCCTGAACTGGAGAGAGAGAACGCTGC
TGATAGATGCTCACAATGAGACGTTTGCGAGCCGAGTGACAGTGAAGGAGAGCTGCCGCTACACAGTCCA
TCCTGAGAATGAAGACTGGACTTGCTTTGAACAGTCTGCCTCCCTGGATGTCCGCTCTTTCTTTGGCTTT
GAAAGCACGTTGGAGAAGATCGCCATGAAGCAGTACACTGCCAATGTCAAGAGGGGGAAGGAGGTGATTG
AACACTATCTGAATGAGCTCATTTCCCAGGGAACATCCCACATTCCCCGCTGGACACCAGCCCCAGTCCA
GGAGGAGGACGTCCGCAGCCAGCTTGTGCCCCAGTGCCCTAGCTCCCTGGACATGGAGGGTCCCAGTGAT
GCCCCAGGCCCTGCTTCTGAGATGGCCATAGCGGATGGGGACAAGCTGGATGCAGACTACATTGAGAGAT
GTCTGGGCCATCTCAGTCCCATGCAGGAGAGTTGCCTGGTTCAGCTTCGGCACTGGTTACAGGAGACCCA
CAAAGGCAAGATCCCCAAAGACGAGCATATCCTGCGCTTCCTGAGGGCACGAGACTTCCACCTGGACAAG
GCCCGGGACATGTTGTGCCAGTCCTTGAGCTGGCGGAAGCAGCACCAGGTGGATCTCCTTCTGCAGACCT
GGCGGCCCCCTCCCCCCCTGCAGGAGTTCTATGCTGGAGGCTGGCACTACCAGGATATAGATGGCCGCCC
CCTTTACATCCTGCGCCTGGGACAGATGGACACCAAAGGCCTGATGAAGGCGGTAGGAGAGGAAGCTCTG
CTGCAGCACGTTCTTTCTGTCAATGAGGAAGGACAGAAGAGATGCGAAGGGAACACGAGACAATTTGGGC
GTCCCATCAGCTCCTGGACCTGCTTGCTGGACCTGGAGGGCCTCAACATGCGGCATTTGTGGCGACCTGG
AGTGAAAGCCCTACTGCGGATGATCGAGGTGGTAGAGGACAATTACCCCGAGACTCTGGGCAGGCTGCTC
ATCGTGCGTGCTCCCCGAGTCTTCCCAGTGCTATGGACACTGGTCAGCCCCTTCATCAATGAGAACACCA
GGCGGAAGTTCCTCATCTACAGTGGCAGTAATTACCAGGGCCCTGGCGGCCTAGTGGACTATCTGGACAA
GGATGTGATCCCTGACTTCCTCGGAGGGGAGAGCGTGTGTAATGTTCCAGAAGGAGGGATGGTCCCCAAG
TCCCTCTATCTGACAGAGGAGGAGCAGGAGCAGGCTGACCAGCTACAGCAGTGGAGTGAAACCTACCATT
CTGCCAGTGTGCTCCGAGGGACCCCCTATGAGGTTGCCATGGAGATACCAGAAGGGGAGTCAGTCATCAC
CTGGGACTTTGATATCCTCAGAGGGGATGTGGTGTTCAGTCTGTACCATGCAAAGCAGGCACCCAAGCTC
AGTCCCCAGGAGCCTGGAGTGAGAGCCAGTGGGCAGCTGATTGACAAGAGCTGGATCCTGGGGGTGGATT
ACAGCCGTGTAGAGGCACCCCTCATCTGCCGGGAAGGGCAGAGCATTCAGGGCTCCCATGTTACTCAGTG
GCCTGGCATCTACCTGCTCCAGTGGCAGATTCACAGTTCCCCTGAGAGTGTGGCCTGCAGTCTCCCAGGT
GTGGATGACGTCCTGACGGCTCTGCACAGCCCTGGCCCCAAGTGCAAGCTGCTGTACTACTGTGAAGTGC
TGGCATCTGAAGACTTTAGGGGCTCCATGTCCAGCCTGGAATCCTGTGCCAGCCGCTTCTCTCAGCTCAG
CGCCACCACCTCCTCTTCCTCCTCTGGCCAGTCCCACAGTGGCTCGATGGTGTCCAGATAA

Translation (696 aa):
MVQKYQSPVRVYKYPFELVMAAYEKRFPTCPLIPVFLGSEVLGEWRSTDGAVHTVERSCRLRVDAPRLLR
KIAGVEHVVFIQRNVLNWRERTLLIDAHNETFASRVTVKESCRYTVHPENEDWTCFEQSASLDVRSFFGF
ESTLEKIAMKQYTANVKRGKEVIEHYLNELISQGTSHIPRWTPAPVQEEDVRSQLVPQCPSSLDMEGPSD
APGPASEMAIADGDKLDADYIERCLGHLSPMQESCLVQLRHWLQETHKGKIPKDEHILRFLRARDFHLDK
ARDMLCQSLSWRKQHQVDLLLQTWRPPPPLQEFYAGGWHYQDIDGRPLYILRLGQMDTKGLMKAVGEEAL
LQHVLSVNEEGQKRCEGNTRQFGRPISSWTCLLDLEGLNMRHLWRPGVKALLRMIEVVEDNYPETLGRLL
IVRAPRVFPVLWTLVSPFINENTRRKFLIYSGSNYQGPGGLVDYLDKDVIPDFLGGESVCNVPEGGMVPK
SLYLTEEEQEQADQLQQWSETYHSASVLRGTPYEVAMEIPEGESVITWDFDILRGDVVFSLYHAKQAPKL
SPQEPGVRASGQLIDKSWILGVDYSRVEAPLICREGQSIQGSHVTQWPGIYLLQWQIHSSPESVACSLPG
VDDVLTALHSPGPKCKLLYYCEVLASEDFRGSMSSLESCASRFSQLSATTSSSSSGQSHSGSMVSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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