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Report for CCDS50793.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50793.1 Public Mus musculus 2 Sys1 23 108 98 CCDS HistoryNCBI Gene:66460Re-query CCDS DB by CCDS ID:50793.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50793.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072452.10 ENSMUSP00000072275.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072452.10Link to Ensembl Protein Viewer:ENSMUSP00000072275.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000072452Re-query CCDS DB by Protein ID:ENSMUSP00000072275
Original member Current member EBI ENSMUST00000109352.7 ENSMUSP00000104976.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109352.7Link to Ensembl Protein Viewer:ENSMUSP00000104976.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109352Re-query CCDS DB by Protein ID:ENSMUSP00000104976
Original member Current member EBI ENSMUST00000125086.1 ENSMUSP00000121900.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000125086.1Link to Ensembl Protein Viewer:ENSMUSP00000121900.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000125086Re-query CCDS DB by Protein ID:ENSMUSP00000121900
Original member NCBI NM_025575.3 NP_079851.2 Updated not alive Link to Nucleotide Sequence:NM_025575.3Link to Protein Sequence:NP_079851.2Re-query CCDS DB by Nucleotide ID:NM_025575Re-query CCDS DB by Protein ID:NP_079851
Current member NCBI NM_025575.4 NP_079851.2 Accepted alive Link to Nucleotide Sequence:NM_025575.4Link to Protein Sequence:NP_079851.2Re-query CCDS DB by Nucleotide ID:NM_025575Re-query CCDS DB by Protein ID:NP_079851Link to BLAST:NP_079851.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079851.2 156 Q78S06 156 100% 0 0

Chromosomal Locations for CCDS 50793.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164461368 164461529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164463301 164463368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164464358 164464598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGGCGGGCCAGTTCCGCAGCTACGTGTGGGACCCGTTGCTAATCCTGTCGCAGATCGTACTCATGCAGA
CCGTCTACTATGGCTCTCTGGGCCTGTGGCTGGCGCTGGTGGACGCGCTGGTGCGCAGCAGCCCGTCCCT
GGACCAGATGTTCGACGCGGAGATCCTGGGCTTCTCCACCCCTCCAGGCCGGCTCTCAATGATGTCCTTC
GTCCTCAACGCCCTCACCTGTGCCCTGGGCTTGCTGTACTTCATCCGGCGAGGGAAGCAGTGCCTGGATT
TCACTGTCACTGTGCATTTCTTTCACCTCCTGGGCTGCTGGCTCTACAGCTCCCGTTTCCCCTCGGCGCT
GACCTGGTGGCTGGTCCAGGCTGTGTGCATTGCACTCATGGCCGTCATCGGGGAGTACCTGTGCATGCGG
ACGGAGCTCAAGGAGATCCCCCTCAGCTCAGCCCCTAAGTCCAATGTCTAG

Translation (156 aa):
MAGQFRSYVWDPLLILSQIVLMQTVYYGSLGLWLALVDALVRSSPSLDQMFDAEILGFSTPPGRLSMMSF
VLNALTCALGLLYFIRRGKQCLDFTVTVHFFHLLGCWLYSSRFPSALTWWLVQAVCIALMAVIGEYLCMR
TELKEIPLSSAPKSNV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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