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Report for CCDS38281.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38281.1 Public Mus musculus 2 Mcts2 23 108 98 CCDS HistoryNCBI Gene:66405Re-query CCDS DB by CCDS ID:38281.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38281.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062148.8 ENSMUSP00000100534.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062148.8Link to Ensembl Protein Viewer:ENSMUSP00000100534.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000062148Re-query CCDS DB by Protein ID:ENSMUSP00000100534
Original member NCBI NM_025543.2 NP_079819.1 Updated not alive Link to Nucleotide Sequence:NM_025543.2Link to Protein Sequence:NP_079819.1Re-query CCDS DB by Nucleotide ID:NM_025543Re-query CCDS DB by Protein ID:NP_079819
Current member NCBI NM_025543.3 NP_079819.1 Accepted alive Link to Nucleotide Sequence:NM_025543.3Link to Protein Sequence:NP_079819.1Re-query CCDS DB by Nucleotide ID:NM_025543Re-query CCDS DB by Protein ID:NP_079819Link to BLAST:NP_079819.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079819.1 181 Q9CQ21 181 100% 0 0

Chromosomal Locations for CCDS 38281.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 152687271 152687816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (546 nt):
ATGTTCAAGAAATTTGACGAGAAGGAAAGTGTGTCCAACTGCATCCAACTGAAAACTTCCGTTATTAAGG
GTATTAAGAGCCAACTGACTGAGCAGTTTCCAGGTATCGAGCCGTGGCTTAATCAAATCATGCCTAAGAA
AGATCCCGTCAAAATAGTGAGATGCCATGAACACATGGAAATCCTTACAGTCAACGGAGAATTACTGTTT
TTCAGGCAGAGAAAAGGACCTTTTTATCCAACGCTAAGACTACTTCACAAATACCCGTTTATCCTGCCAC
ACCAGCAGGTCGACAAAGGAGCCATCAAATTTGTGCTCAGTGGTGCAAATATCATGTGCCCGGGTTTAAC
GTCTCCTGGAGCGAAGCTCTACACTGCTGCAGTAGATACCATCGTGGCGGTCATGGCAGAGGGGAAAGAG
CATGCCCTGTGTGTCGGAGTCATGAAGATGGCTGCAGCAGACATTGAGAAAATCAACAAGGGGATCGGCA
TTGAGAATATCCATTATCTAAATGACGGGCTGTGGCACATGAAGACATATAAGTGA

Translation (181 aa):
MFKKFDEKESVSNCIQLKTSVIKGIKSQLTEQFPGIEPWLNQIMPKKDPVKIVRCHEHMEILTVNGELLF
FRQRKGPFYPTLRLLHKYPFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYTAAVDTIVAVMAEGKE
HALCVGVMKMAAADIEKINKGIGIENIHYLNDGLWHMKTYK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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