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Report for CCDS25770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25770.1 Public Mus musculus 11 Ogfod3 23 108 98 CCDS HistoryNCBI Gene:66179Re-query CCDS DB by CCDS ID:25770.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026169.6 ENSMUSP00000026169.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026169.6Link to Ensembl Protein Viewer:ENSMUSP00000026169.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000026169Re-query CCDS DB by Protein ID:ENSMUSP00000026169
Original member Current member NCBI NM_025402.2 NP_079678.1 Accepted alive Link to Nucleotide Sequence:NM_025402.2Link to Protein Sequence:NP_079678.1Re-query CCDS DB by Nucleotide ID:NM_025402Re-query CCDS DB by Protein ID:NP_079678Link to BLAST:NP_079678.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079678.1 315 Q9D136 315 100% 0 0

Chromosomal Locations for CCDS 25770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 121177802 121177938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121183411 121183534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121195080 121195233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121196737 121196793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121197431 121197495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121199766 121199808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121200911 121200986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121202891 121203108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121204489 121204562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (948 nt):
ATGGCGCCTCAGCGGAGGGGACCACCCAGAATTCCCGAGGGAAGTAGTGCTGCAGAGCGCCGGCGCGCGA
CCAGTACCAAGAAGGACCGGCTGCCTCGGGAGGCACAGAGGACATGGCTAAGGATTGTGGCCTTTGGGGT
CGGCCTTGCTCTGGTCACATGTCTGCTCTGGAGTAGTGTGGGGATCGATGATGATGTTGCTGAGGTTGTG
GCCCGTCGTGGTGAGGTCCTAGAAGGCAGGTTCATTGAGGTTCCCTGCTCTGAGGACTACGATGGTCACC
GAAGGTTTGAAGGCTGTACCCCCAGGAAGTGTGGCAGAGGTGTCACTGACATCGTCATCACCAGGGAGGA
GGCGGAGCAGATTCGCAGAATAGCAGAGAAAGGGCTCTCCCTAGGTGGATCGGATGGAGGGGCATCTATC
CTGGACCTGCACTCTGGAGCCTTGTCTGTTGGGAAACACTTTGTGAACCTGTATAGATACTTTGGAGATA
AAATACAAAATATCTTCTCTGAGGAGGACTTTCAGTTATATAGGGACATTCGGCAGAAGGTCCAGCTCAC
CATCGCGGAAGCTTTCGGCATCAGTGCATCCTTGCTGTACCTGACGAAGCCCACATTTTTCTCGCGAATA
AATAGCACAGAAGCCCGGACAGCTCATGATGAGTACTGGCACGCACACGTGGACAAGGTGACCTACGGCT
CTTTTGACTACACTTCGCTGCTTTACCTATCGGATTACTTAGAGGACTTCGGTGGAGGGCGCTTTGTGTT
CATGGAAGAAGGGTCCAACAAGACAGTGGAGCCCAGAGCTGGTCGAGTCTCATTCTTTACCTCAGGCTCT
GAGAACCTGCACCGAGTGGAGAAAGTCCTCTGGGGCACCCGCTACGCCATCACCATCGCTTTCACCTGCA
ACCCGGACCACGGCATCGAGGACCCAGTACTCACGTGA

Translation (315 aa):
MAPQRRGPPRIPEGSSAAERRRATSTKKDRLPREAQRTWLRIVAFGVGLALVTCLLWSSVGIDDDVAEVV
ARRGEVLEGRFIEVPCSEDYDGHRRFEGCTPRKCGRGVTDIVITREEAEQIRRIAEKGLSLGGSDGGASI
LDLHSGALSVGKHFVNLYRYFGDKIQNIFSEEDFQLYRDIRQKVQLTIAEAFGISASLLYLTKPTFFSRI
NSTEARTAHDEYWHAHVDKVTYGSFDYTSLLYLSDYLEDFGGGRFVFMEEGSNKTVEPRAGRVSFFTSGS
ENLHRVEKVLWGTRYAITIAFTCNPDHGIEDPVLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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