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Report for CCDS33608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33608.1 Public Homo sapiens 22 SLC7A4 24 110 108 CCDS HistoryNCBI Gene:6545Re-query CCDS DB by CCDS ID:33608.1See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382932.3 ENSP00000372390.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382932.3Link to Ensembl Protein Viewer:ENSP00000372390.2Re-query CCDS DB by Nucleotide ID:ENST00000382932Re-query CCDS DB by Protein ID:ENSP00000372390
Original member Current member EBI ENST00000403586.5 ENSP00000384278.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403586.5Link to Ensembl Protein Viewer:ENSP00000384278.1Re-query CCDS DB by Nucleotide ID:ENST00000403586Re-query CCDS DB by Protein ID:ENSP00000384278
Original member Current member NCBI NM_004173.3 NP_004164.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004173.3Link to Protein Sequence:NP_004164.2Re-query CCDS DB by Nucleotide ID:NM_004173Re-query CCDS DB by Protein ID:NP_004164Link to BLAST:NP_004164.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004164.2 635 O43246 635 100% 0 0

Chromosomal Locations for CCDS 33608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 21029055 21029230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 21029336 21029444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 21029711 21030351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 21030831 21031812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1908 nt):
ATGGCCCGGGGGCTGCCCACCATTGCTAGCCTGGCACGCTTATGCCAGAAGCTGAACCGCCTGAAGCCGC
TGGAGGACTCCACCATGGAGACGTCACTGCGGCGCTGCCTGTCCACGCTGGACCTGACTCTTCTGGGCGT
GGGTGGCATGGTGGGCTCGGGTCTCTACGTGCTCACAGGTGCCGTGGCCAAGGAGGTGGCTGGCCCTGCT
GTGCTCTTGTCCTTCGGTGTGGCCGCTGTGGCCTCCCTGCTGGCAGCCCTATGCTATGCAGAATTTGGGG
CACGTGTGCCACGCACGGGCTCTGCCTACCTGTTCACCTACGTATCCATGGGCGAGCTGTGGGCCTTCCT
CATCGGCTGGAATGTTCTCCTCGAATACATCATCGGTGGCGCCGCCGTGGCCCGTGCCTGGAGTGGCTAC
CTGGACTCTATGTTCAGCCACAGCATCCGCAACTTCACTGAGACCCACGTGGGTTCTTGGCAGGTGCCCC
TCCTGGGCCACTACCCGGACTTCCTGGCTGCTGGCATCATCCTCCTGGCCTCTGCCTTTGTCTCCTGTGG
AGCCCGCGTGTCCTCCTGGCTCAATCACACCTTCTCGGCCATCAGCCTGCTTGTCATTCTCTTCATTGTC
ATCCTGGGCTTCATCCTGGCCCAGCCTCACAACTGGAGCGCTGACGAAGGCGGCTTTGCACCCTTCGGCT
TCTCCGGCGTCATGGCCGGCACTGCCTCCTGCTTCTATGCTTTCGTGGGCTTCGACGTCATTGCCGCCTC
CAGTGAGGAGGCCCAGAACCCACGGCGGTCTGTGCCTCTGGCCATCGCCATCTCGCTTGCCATTGCAGCT
GGTGCCTACATCCTTGTCTCCACCGTGCTAACCCTCATGGTGCCCTGGCACAGCCTGGACCCCGACTCAG
CGCTTGCAGATGCCTTCTACCAGCGGGGCTACAGGTGGGCTGGCTTCATCGTGGCAGCTGGCTCCATCTG
CGCCATGAACACCGTCCTGCTCAGCCTCCTCTTCTCCCTGCCACGCATTGTCTATGCCATGGCCGCCGAT
GGGCTCTTCTTCCAGGTGTTTGCCCATGTGCACCCCCGGACACAGGTGCCTGTGGCGGGCACCCTGGCGT
TCGGGCTCCTCACGGCCTTCCTGGCACTGCTGCTGGACCTGGAGTCGCTGGTTCAGTTCCTGTCCCTTGG
CACACTCCTGGCCTACACATTCGTGGCCACCAGTATCATTGTGCTGCGCTTCCAGAAGTCTTCCCCGCCC
AGCTCCCCAGGCCCAGCCAGCCCTGGCCCCCTGACCAAGCAGCAGAGCTCCTTCTCAGACCACCTACAGC
TGGTGGGCACTGTACACGCCTCCGTCCCTGAGCCAGGGGAGCTGAAGCCAGCCCTGAGGCCCTACCTGGG
CTTCTTGGATGGGTACAGCCCTGGAGCAGTGGTGACTTGGGCGCTTGGCGTTATGTTGGCCTCAGCCATC
ACCATAGGCTGCGTGCTTGTCTTTGGGAACTCGACCCTGCACCTCCCACACTGGGGTTACATCCTGCTGC
TCCTGCTCACCAGTGTCATGTTTCTGCTCAGCCTCCTTGTCCTGGGGGCTCACCAGCAACAGTATCGGGA
AGACTTATTTCAGATCCCCATGGTTCCCCTGATTCCAGCCCTGAGCATCGTCCTCAACATCTGCCTCATG
CTGAAACTTAGCTATCTGACCTGGGTGCGCTTCTCCATCTGGCTGCTGATGGGACTTGCAGTGTATTTCG
GCTATGGCATCCGGCATAGCAAGGAGAACCAGCGGGAGCTGCCAGGGCTGAACTCCACACACTACGTGGT
ATTCCCCAGGGGCAGCCTGGAGGAGACAGTGCAGGCTATGCAGCCCCCCAGCCAGGCACCAGCACAGGAC
CCTGGCCATATGGAGTAG

Translation (635 aa):
MARGLPTIASLARLCQKLNRLKPLEDSTMETSLRRCLSTLDLTLLGVGGMVGSGLYVLTGAVAKEVAGPA
VLLSFGVAAVASLLAALCYAEFGARVPRTGSAYLFTYVSMGELWAFLIGWNVLLEYIIGGAAVARAWSGY
LDSMFSHSIRNFTETHVGSWQVPLLGHYPDFLAAGIILLASAFVSCGARVSSWLNHTFSAISLLVILFIV
ILGFILAQPHNWSADEGGFAPFGFSGVMAGTASCFYAFVGFDVIAASSEEAQNPRRSVPLAIAISLAIAA
GAYILVSTVLTLMVPWHSLDPDSALADAFYQRGYRWAGFIVAAGSICAMNTVLLSLLFSLPRIVYAMAAD
GLFFQVFAHVHPRTQVPVAGTLAFGLLTAFLALLLDLESLVQFLSLGTLLAYTFVATSIIVLRFQKSSPP
SSPGPASPGPLTKQQSSFSDHLQLVGTVHASVPEPGELKPALRPYLGFLDGYSPGAVVTWALGVMLASAI
TIGCVLVFGNSTLHLPHWGYILLLLLTSVMFLLSLLVLGAHQQQYREDLFQIPMVPLIPALSIVLNICLM
LKLSYLTWVRFSIWLLMGLAVYFGYGIRHSKENQRELPGLNSTHYVVFPRGSLEETVQAMQPPSQAPAQD
PGHME


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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