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Report for CCDS44455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44455.1 Public Homo sapiens 10 LIPK 24 110 108 CCDS HistoryNCBI Gene:643414Re-query CCDS DB by CCDS ID:44455.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44455.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000404190.3 ENSP00000383900.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000404190.3Link to Ensembl Protein Viewer:ENSP00000383900.1Re-query CCDS DB by Nucleotide ID:ENST00000404190Re-query CCDS DB by Protein ID:ENSP00000383900
Original member Current member NCBI NM_001080518.2 NP_001073987.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080518.2Link to Protein Sequence:NP_001073987.1Re-query CCDS DB by Nucleotide ID:NM_001080518Re-query CCDS DB by Protein ID:NP_001073987Link to BLAST:NP_001073987.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073987.1 399 Q5VXJ0 399 100% 0 0

Chromosomal Locations for CCDS 44455.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 88724544 88724648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88726795 88726912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88730983 88731181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88732178 88732287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88732415 88732551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88737635 88737781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88739996 88740067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88743250 88743321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 88752517 88752756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGTGGCAGCTTTTAGCAGCAGCATGCTGGATGCTTCTTCTTGGATCTATGTATGGTTATGACAAGAAAG
GAAACAATGCAAACCCTGAAGCTAATATGAATATTAGCCAGATTATTTCTTACTGGGGTTATCCTTATGA
AGAGTATGATGTTACAACAAAAGATGGTTATATCCTTGGAATTTATAGGATTCCACATGGAAGAGGATGC
CCAGGGAGGACAGCTCCAAAGCCTGCTGTGTATTTGCAGCATGGCTTAATTGCATCTGCCAGTAACTGGA
TTTGCAACCTGCCCAACAACAGTTTGGCTTTCCTTCTGGCAGATAGTGGTTATGACGTGTGGTTGGGGAA
CAGCCGAGGAAACACTTGGTCCAGAAAACACCTTAAATTGTCACCGAAATCACCGGAATACTGGGCCTTC
AGTTTGGATGAGATGGCTAAATATGACCTTCCAGCCACAATCAATTTTATCATAGAGAAAACTGGACAGA
AGCGACTCTACTACGTGGGCCACTCACAAGGCACCACCATAGCTTTTATAGCATTTTCTACAAACCCAGA
ACTGGCTAAAAAGATTAAGATATTTTTTGCACTGGCTCCAGTTGTCACAGTTAAATACACCCAAAGTCCT
ATGAAAAAACTAACAACCCTTTCCAGGCGAGTAGTTAAGGTGTTGTTTGGTGACAAAATGTTCCACCCTC
ATACATTGTTTGACCAATTCATTGCCACCAAAGTGTGCAATCGAAAGCTATTCCGTCGTATTTGCAGCAA
CTTCCTATTTACTCTGAGTGGATTTGATCCGCAAAACTTAAATATGAGTCGCTTGGATGTTTATTTGTCA
CACAATCCTGCGGGAACATCTGTTCAGAATATGCTGCACTGGGCTCAGGCTGTTAATTCTGGTCAGCTCC
AAGCTTTTGATTGGGGAAACTCTGATCAGAACATGATGCACTTCCATCAGCTTACACCTCCTTTATACAA
CATTACTAAGATGGAAGTTCCAACAGCAATATGGAATGGTGGACAGGACATTGTGGCTGATCCCAAGGAT
GTTGAAAATTTACTTCCTCAAATTGCTAACCTTATTTATTACAAGCTGATTCCACACTACAATCATGTGG
ATTTTTACCTTGGAGAGGATGCACCTCAGGAAATTTACCAAGACCTAATTATATTGATGGAAGAATATTT
ACAAAATTAA

Translation (399 aa):
MWQLLAAACWMLLLGSMYGYDKKGNNANPEANMNISQIISYWGYPYEEYDVTTKDGYILGIYRIPHGRGC
PGRTAPKPAVYLQHGLIASASNWICNLPNNSLAFLLADSGYDVWLGNSRGNTWSRKHLKLSPKSPEYWAF
SLDEMAKYDLPATINFIIEKTGQKRLYYVGHSQGTTIAFIAFSTNPELAKKIKIFFALAPVVTVKYTQSP
MKKLTTLSRRVVKVLFGDKMFHPHTLFDQFIATKVCNRKLFRRICSNFLFTLSGFDPQNLNMSRLDVYLS
HNPAGTSVQNMLHWAQAVNSGQLQAFDWGNSDQNMMHFHQLTPPLYNITKMEVPTAIWNGGQDIVADPKD
VENLLPQIANLIYYKLIPHYNHVDFYLGEDAPQEIYQDLIILMEEYLQN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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