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Report for CCDS5446.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5446.1 Public Homo sapiens 7 HERPUD2 24 110 108 CCDS HistoryNCBI Gene:64224Re-query CCDS DB by CCDS ID:5446.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5446.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311350.8 ENSP00000310729.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311350.8Link to Ensembl Protein Viewer:ENSP00000310729.3Re-query CCDS DB by Nucleotide ID:ENST00000311350Re-query CCDS DB by Protein ID:ENSP00000310729
Original member Current member EBI ENST00000396081.5 ENSP00000379390.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396081.5Link to Ensembl Protein Viewer:ENSP00000379390.1Re-query CCDS DB by Nucleotide ID:ENST00000396081Re-query CCDS DB by Protein ID:ENSP00000379390
Original member Current member NCBI NM_022373.5 NP_071768.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022373.5Link to Protein Sequence:NP_071768.3Re-query CCDS DB by Nucleotide ID:NM_022373Re-query CCDS DB by Protein ID:NP_071768Link to BLAST:NP_071768.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071768.3 406 Q9BSE4 406 100% 0 0

Chromosomal Locations for CCDS 5446.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 35633690 35633851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35634312 35634429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35635135 35635458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35638350 35638472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35667434 35667588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35670215 35670328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35673201 35673278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 35694184 35694330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1221 nt):
ATGGACCAAAGTGGGATGGAGATTCCTGTGACCCTCATCATTAAAGCACCGAATCAGAAATACAGTGACC
AGACTATTAGCTGCTTCTTGAACTGGACCGTGGGGAAACTAAAAACGCATCTATCTAACGTTTACCCTAG
CAAACCATTGACGAAGGATCAGAGATTGGTGTATTCGGGCAGACTGCTTCCCGATCATCTGCAGCTGAAA
GACATTCTCAGAAAACAAGATGAGTATCATATGGTTCATCTAGTATGTACTTCTCGGACTCCTCCCAGTT
CTCCAAAATCCAGCACCAATAGAGAAAGTCATGAAGCATTGGCATCCAGCAGCAATTCTAGTTCAGATCA
TTCAGGATCAACAACTCCATCATCTGGTCAAGAAACCTTGTCTTTAGCTGTGGGTTCTTCCTCAGAAGGA
TTGAGGCAGCGTACCCTTCCACAAGCACAAACTGACCAAGCACAGAGTCACCAGTTTCCATATGTAATGC
AAGGAAATGTAGACAACCAATTTCCTGGGCAAGCTGCTCCACCTGGATTCCCAGTGTATCCCGCGTTTAG
CCCACTGCAGATGCTATGGTGGCAACAGATGTATGCTCATCAGTATTATATGCAGTATCAAGCTGCAGTT
TCAGCTCAGGCCACATCAAATGTCAACCCAACCCAGCCTACTACTTCACAGCCTCTAAATTTGGCACATG
TTCCTGGAGAAGAACCCCCACCAGCTCCAAACCTAGTGGCCCAAGAAAATCGACCCATGAATGAGAATGT
TCAAATGAATGCACAGGGAGGTCCAGTACTAAATGAAGAAGACTTCAATCGAGACTGGCTAGACTGGATG
TACACGTTCTCACGAGCTGCGATTCTCCTTAGCATTGTATACTTCTATTCTTCTTTTAGTCGGTTTATCA
TGGTAATGGGAGCCATGCTACTGGTTTATTTACACCAAGCTGGATGGTTTCCTTTTAGGCAAGAAGGAGG
TCATCAGCAGGCTCCCAACAATAATGCCGAAGTTAACAATGATGGGCAAAATGCAAACAACTTGGAACTT
GAAGAAATGGAGCGTCTTATGGATGATGGGCTTGAAGATGAGAGTGGAGAAGATGGAGGTGAAGATGCCA
GTGCAATTCAAAGGCCTGGATTAATGGCTTCAGCTTGGTCTTTCATCACCACCTTCTTTACTTCACTAAT
ACCAGAGGGGCCTCCCCAGGTTGCCAATTGA

Translation (406 aa):
MDQSGMEIPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLK
DILRKQDEYHMVHLVCTSRTPPSSPKSSTNRESHEALASSSNSSSDHSGSTTPSSGQETLSLAVGSSSEG
LRQRTLPQAQTDQAQSHQFPYVMQGNVDNQFPGQAAPPGFPVYPAFSPLQMLWWQQMYAHQYYMQYQAAV
SAQATSNVNPTQPTTSQPLNLAHVPGEEPPPAPNLVAQENRPMNENVQMNAQGGPVLNEEDFNRDWLDWM
YTFSRAAILLSIVYFYSSFSRFIMVMGAMLLVYLHQAGWFPFRQEGGHQQAPNNNAEVNNDGQNANNLEL
EEMERLMDDGLEDESGEDGGEDASAIQRPGLMASAWSFITTFFTSLIPEGPPQVAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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