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Report for CCDS8415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8415.1 Public Homo sapiens 11 ABCG4 24 110 108 CCDS HistoryNCBI Gene:64137Re-query CCDS DB by CCDS ID:8415.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000615496.4 ENSP00000479253.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000615496.4Link to Ensembl Protein Viewer:ENSP00000479253.1Re-query CCDS DB by Nucleotide ID:ENST00000615496Re-query CCDS DB by Protein ID:ENSP00000479253
Original member Current member EBI ENST00000619701.5 ENSP00000481728.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619701.5Link to Ensembl Protein Viewer:ENSP00000481728.1Re-query CCDS DB by Nucleotide ID:ENST00000619701Re-query CCDS DB by Protein ID:ENSP00000481728
Original member Current member EBI ENST00000622721.1 ENSP00000484289.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622721.1Link to Ensembl Protein Viewer:ENSP00000484289.1Re-query CCDS DB by Nucleotide ID:ENST00000622721Re-query CCDS DB by Protein ID:ENSP00000484289
Original member Current member NCBI NM_001142505.1 NP_001135977.1 Accepted alive Link to Nucleotide Sequence:NM_001142505.1Link to Protein Sequence:NP_001135977.1Re-query CCDS DB by Nucleotide ID:NM_001142505Re-query CCDS DB by Protein ID:NP_001135977Link to BLAST:NP_001135977.1
Original member Current member NCBI NM_001348191.2 NP_001335120.1 Accepted alive Link to Nucleotide Sequence:NM_001348191.2Link to Protein Sequence:NP_001335120.1Re-query CCDS DB by Nucleotide ID:NM_001348191Re-query CCDS DB by Protein ID:NP_001335120Link to BLAST:NP_001335120.1
Original member Current member NCBI NM_022169.5 NP_071452.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022169.5Link to Protein Sequence:NP_071452.2Re-query CCDS DB by Nucleotide ID:NM_022169Re-query CCDS DB by Protein ID:NP_071452Link to BLAST:NP_071452.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135977.1 646 Q9H172-1 646 100% 0 0
NP_001335120.1 646 Q9H172-1 646 100% 0 0
NP_071452.2 646 Q9H172-1 646 100% 0 0

Chromosomal Locations for CCDS 8415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 119149966 119150203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119154026 119154143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119154260 119154392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119154525 119154575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119154770 119154915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119156329 119156452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119156564 119156678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119156872 119157014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119158234 119158332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119158557 119158725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119158829 119158929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119160227 119160385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119160538 119160656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 119160881 119161106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1941 nt):
ATGGCGGAGAAGGCGCTGGAGGCCGTGGGCTGTGGACTAGGGCCGGGGGCTGTGGCCATGGCCGTGACGC
TGGAGGACGGGGCGGAACCCCCTGTGCTGACCACGCACCTGAAGAAGGTGGAGAACCACATCACTGAAGC
CCAGCGCTTCTCCCACCTACCCAAGCGCTCAGCCGTGGACATCGAGTTCGTGGAGCTGTCCTATTCCGTG
CGGGAGGGGCCCTGCTGGCGCAAAAGGGGTTATAAGACCCTTCTCAAGTGCCTCTCAGGTAAATTCTGCC
GCCGGGAGCTGATTGGCATCATGGGCCCCTCAGGGGCTGGCAAGTCTACATTCATGAACATCTTGGCAGG
ATACAGGGAGTCTGGAATGAAGGGGCAGATCCTGGTTAATGGAAGGCCACGGGAGCTGAGGACCTTCCGC
AAGATGTCCTGCTACATCATGCAAGATGACATGCTGCTGCCGCACCTCACGGTGTTGGAAGCCATGATGG
TCTCTGCTAACCTGAAGCTGAGTGAGAAGCAGGAGGTGAAGAAGGAGCTGGTGACAGAGATCCTGACGGC
ACTGGGCCTGATGTCGTGCTCCCACACGAGGACAGCCCTGCTCTCTGGCGGGCAGAGGAAGCGTCTGGCC
ATCGCCCTGGAGCTGGTCAACAACCCGCCTGTCATGTTCTTTGATGAGCCCACCAGTGGTCTGGATAGCG
CCTCTTGTTTCCAAGTGGTGTCCCTCATGAAGTCCCTGGCACAGGGGGGCCGTACCATCATCTGCACCAT
CCACCAGCCCAGTGCCAAGCTCTTTGAGATGTTTGACAAGCTCTACATCCTGAGCCAGGGTCAGTGCATC
TTCAAAGGCGTGGTCACCAACCTGATCCCCTATCTAAAGGGACTCGGCTTGCATTGCCCCACCTACCACA
ACCCGGCTGACTTCATCATCGAGGTGGCCTCTGGCGAGTATGGAGACCTGAACCCCATGTTGTTCAGGGC
TGTGCAGAATGGGCTGTGCGCTATGGCTGAGAAGAAGAGCAGCCCTGAGAAGAACGAGGTCCCTGCCCCA
TGCCCTCCTTGTCCTCCGGAAGTGGATCCCATTGAAAGCCACACCTTTGCCACCAGCACCCTCACACAGT
TCTGCATCCTCTTCAAGAGGACCTTCCTGTCCATCCTCAGGGACACGGTCCTGACCCACCTACGGTTCAT
GTCCCACGTGGTTATTGGCGTGCTCATCGGCCTCCTCTACCTGCATATTGGCGACGATGCCAGCAAGGTC
TTCAACAACACCGGCTGCCTCTTCTTCTCCATGCTGTTCCTCATGTTCGCCGCCCTCATGCCAACTGTGC
TCACCTTCCCCTTAGAGATGGCGGTCTTCATGAGGGAGCACCTCAACTACTGGTACAGCCTCAAAGCGTA
TTACCTGGCCAAGACCATGGCTGACGTGCCCTTTCAGGTGGTGTGTCCGGTGGTCTACTGCAGCATTGTG
TACTGGATGACGGGCCAGCCCGCTGAGACCAGCCGCTTCCTGCTCTTCTCAGCCCTGGCCACCGCCACCG
CCTTGGTGGCCCAATCTTTGGGGCTGCTGATCGGAGCTGCTTCCAACTCCCTACAGGTGGCCACTTTTGT
GGGCCCAGTTACCGCCATCCCTGTCCTCTTGTTCTCCGGCTTCTTTGTCAGCTTCAAGACCATCCCCACT
TACCTGCAATGGAGCTCCTATCTCTCCTATGTCAGGTATGGCTTTGAGGGTGTGATCCTGACGATCTATG
GCATGGAGCGAGGAGACCTGACATGTTTAGAGGAACGCTGCCCGTTCCGGGAGCCACAGAGCATCCTCCG
AGCGCTGGATGTGGAGGATGCCAAGCTCTACATGGACTTCCTGGTCTTGGGCATCTTCTTCCTAGCCCTG
CGGCTGCTGGCCTACCTTGTGCTGCGTTACCGGGTCAAGTCAGAGAGATAG

Translation (646 aa):
MAEKALEAVGCGLGPGAVAMAVTLEDGAEPPVLTTHLKKVENHITEAQRFSHLPKRSAVDIEFVELSYSV
REGPCWRKRGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESGMKGQILVNGRPRELRTFR
KMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEKQEVKKELVTEILTALGLMSCSHTRTALLSGGQRKRLA
IALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTIHQPSAKLFEMFDKLYILSQGQCI
FKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNPMLFRAVQNGLCAMAEKKSSPEKNEVPAP
CPPCPPEVDPIESHTFATSTLTQFCILFKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYLHIGDDASKV
FNNTGCLFFSMLFLMFAALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIV
YWMTGQPAETSRFLLFSALATATALVAQSLGLLIGAASNSLQVATFVGPVTAIPVLLFSGFFVSFKTIPT
YLQWSSYLSYVRYGFEGVILTIYGMERGDLTCLEERCPFREPQSILRALDVEDAKLYMDFLVLGIFFLAL
RLLAYLVLRYRVKSER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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