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Report for CCDS13108.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13108.1 Public Homo sapiens 20 ANKEF1 24 110 108 CCDS HistoryNCBI Gene:63926Re-query CCDS DB by CCDS ID:13108.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13108.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378380.4 ENSP00000367631.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378380.4Link to Ensembl Protein Viewer:ENSP00000367631.3Re-query CCDS DB by Nucleotide ID:ENST00000378380Re-query CCDS DB by Protein ID:ENSP00000367631
Original member Current member EBI ENST00000378392.6 ENSP00000367644.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378392.6Link to Ensembl Protein Viewer:ENSP00000367644.1Re-query CCDS DB by Nucleotide ID:ENST00000378392Re-query CCDS DB by Protein ID:ENSP00000367644
Original member Current member NCBI NM_022096.6 NP_071379.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022096.6Link to Protein Sequence:NP_071379.3Re-query CCDS DB by Nucleotide ID:NM_022096Re-query CCDS DB by Protein ID:NP_071379Link to BLAST:NP_071379.3
Original member Current member NCBI NM_198798.3 NP_942093.1 Accepted alive Link to Nucleotide Sequence:NM_198798.3Link to Protein Sequence:NP_942093.1Re-query CCDS DB by Nucleotide ID:NM_198798Re-query CCDS DB by Protein ID:NP_942093Link to BLAST:NP_942093.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071379.3 776 Q9NU02 776 100% 0 0
NP_942093.1 776 Q9NU02 776 100% 0 0

Chromosomal Locations for CCDS 13108.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 10038302 10038647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10043122 10043321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10044394 10044543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10045574 10045697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10049390 10050212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10051663 10051889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10053112 10053275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10054462 10054599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 10055502 10055660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2331 nt):
ATGGCTTTAGCAGATAAGAGACTTGAGAACTTACAGATCTACAAAGTTCTTCAATGTGTGCGGAACAAAG
ACAAGAAGCAGATAGAGAAGCTGACCAAGCTTGGATACCCTGAACTAATCAATTATACAGAACCCATTAA
TGGACTTAGTGCTTTGCACTTAGCCTCAGTTTCCAATGATATTGATATGGTCAGCTTTCTCCTTGACCTT
GGTGCTCACCCTGATGTGCAAGACCGAATGGGCTGTACTCCCACAATGAGGGCTGCAGAACTGGGCCATG
AATTGTCAATGGAAATATTAGCAAAGGCAAAGGCTGATATGACTATAGTTGATAATGAAGGAAAAGGTGT
TTTGTTTTACTGCATTTTACCGACTAAGCGGCATTATCGCTGTGCTCTGATCGCCCTTGAACATGGTGCA
GATGTCAACAATTCTACCTATGAAGGAAAGCCAATATTCCTTAGAGCTTGTGAAGATGCACATGATGTTA
AAGATGTGTGCCTGACATTTTTGGAAAAAGGAGCCAATCCTAATGCAATCAACTCATCCACAGGCCGCAC
AGCTTTAATGGAAGCGTCAAGAGAAGGGGTAGTGGAAATAGTTCGAGGCATATTGGAAAGAGGAGGTGAA
GTGAATGCATTTGACAACGACAGGCATCACGCTGCTCATTTTGCTGCTAAAGGAGGCTTTTTCGATATAT
TGAAGCTTCTTTTTGCCTACAATGGAGACGTGGGGCTGATTTCGATAAATGGGAACACACCACTTCATTA
TGCTGCCATGGGTGGTTTTGCAGACTGCTGTAAATATATAGCTCAGCGAGGATGTGACCTGAAATGGAAG
AATTTAGATCATAAAACGCCCAGGGCTGTGGCTAAGGAAGGCGGCTTCAAAGCAGCAAGCAAAGAAATAC
GCCGAGCAGAGAGAATCGCTAATAAACTAGCCAGGCCAGGAGCCAAAAATCCAAATCCACTGTGGGCCCT
TAGACTGCACGATTGGTCCGTAGAACGTGAGGCTTTCCTCCGGGAAGCCTTTGCGGTTTTAGACAGGGGT
GATGGAAGCATCAGCAAGAACGACTTCGTGATGGTGTTGGAGGAAAGGCAGGATTATGCAAGCTCAGAAC
AGCTGGCTGCCATCGCTCACCTTCATGAGAAAACCCGGGGAGGAGGGGTCAATATTAATGAATTCTTTAA
AGGAACCAGATATTTAAACAAGTCTTTTGTCTTAGGATCGTATGGACCTAAGAAAAAGGAAAAAGGGATG
GGCAAAAAAGGAAAGAAAGGGAAATTTGTCTTACCCCTTCCAATCTGTGTCATTCCTGAGTACGCGTTTC
CACGCCGGCAGGATGGTGGGCCACCGTATTACATGATTGAGACCTACAAGAATGTCACTGATAGCAGCCG
GTTTAATAGAGATCATCCCCCAGAACATCCCATTCAGGATGACTCTGTTTGGTACATTGATGATTCAGAG
AAGGTATTTTCAAACATTAATATTATCACCAAAGCAGGGGATCTGGCTTCTCTGAAAAAGGCCTTTGAAT
CAGGAATACCTGTGGATATGAAGGATAATTATTACAAAACTCCGCTAATGACGGCGTGTGCAAGTGGAAA
CATAGATGTGGTCAAGTTTCTTCTTGAAAAAGGAGCTAACGTTAATGCAACAGATAACTTTCTGTGGACT
CCACTTCATTTTGCATGCCATGCAGGCCAACAAGACATTGTTGAGCTTCTTGTTGAATCTGGAGCTTTAA
TAGATGCAGCTTCAATCAACAACTCAACTCCTTTAAATAGAGCCATTGAAAGCTGCAGACTGGATACAGT
AAAATACCTACTTGATATTGGTGCTAAATTCCAGCTGGAAAATAGAAAAGGGCATAGTGCCATGGACGTT
GCAAAGGCATATGCTGATTATAGAATAATTGATCTGATTAAAGAAAAGCTAGATAACTTGCCGAAACCAG
CAGAAAATCAAAAACTAAAAGGCAAGACACCTCCTATACTGAAGACTGAAGGCCCTGAAATTAAGAAAGA
AGAGGAACTGCTGTCATCAATTTATGGTGTACCAACCACATCAGAGGGAAAGAAAGTACAGAAGGGTAAT
GTGGTTCATCTGAATTCATTGATTACCAGTGGTTATACTAAGAAAGTGGATATCACATTTATTCCACGGA
GGATTTGGAGTCCTGAAGCCACAACAGCAGAGCTGATCAGGAAGAGGGAACTACGGCGAGAGAGGTTTAC
ACATGAGGTGGACTTCGACGATTTTATGATGCCTTTTCAGAAGAACATCACAGAGAAAGCTCGAGCACTG
GAAGCTGCCTTGAAGACCTAA

Translation (776 aa):
MALADKRLENLQIYKVLQCVRNKDKKQIEKLTKLGYPELINYTEPINGLSALHLASVSNDIDMVSFLLDL
GAHPDVQDRMGCTPTMRAAELGHELSMEILAKAKADMTIVDNEGKGVLFYCILPTKRHYRCALIALEHGA
DVNNSTYEGKPIFLRACEDAHDVKDVCLTFLEKGANPNAINSSTGRTALMEASREGVVEIVRGILERGGE
VNAFDNDRHHAAHFAAKGGFFDILKLLFAYNGDVGLISINGNTPLHYAAMGGFADCCKYIAQRGCDLKWK
NLDHKTPRAVAKEGGFKAASKEIRRAERIANKLARPGAKNPNPLWALRLHDWSVEREAFLREAFAVLDRG
DGSISKNDFVMVLEERQDYASSEQLAAIAHLHEKTRGGGVNINEFFKGTRYLNKSFVLGSYGPKKKEKGM
GKKGKKGKFVLPLPICVIPEYAFPRRQDGGPPYYMIETYKNVTDSSRFNRDHPPEHPIQDDSVWYIDDSE
KVFSNINIITKAGDLASLKKAFESGIPVDMKDNYYKTPLMTACASGNIDVVKFLLEKGANVNATDNFLWT
PLHFACHAGQQDIVELLVESGALIDAASINNSTPLNRAIESCRLDTVKYLLDIGAKFQLENRKGHSAMDV
AKAYADYRIIDLIKEKLDNLPKPAENQKLKGKTPPILKTEGPEIKKEEELLSSIYGVPTTSEGKKVQKGN
VVHLNSLITSGYTKKVDITFIPRRIWSPEATTAELIRKRELRRERFTHEVDFDDFMMPFQKNITEKARAL
EAALKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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