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Report for CCDS48617.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48617.1 Public Mus musculus 10 Vmn2r82 23 108 98 CCDS HistoryNCBI Gene:624845Re-query CCDS DB by CCDS ID:48617.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 48617.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170596.3 ENSMUSP00000130114.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170596.3Link to Ensembl Protein Viewer:ENSMUSP00000130114.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000170596Re-query CCDS DB by Protein ID:ENSMUSP00000130114
Original member Current member NCBI NM_001101572.1 NP_001095042.1 Accepted alive Link to Nucleotide Sequence:NM_001101572.1Link to Protein Sequence:NP_001095042.1Re-query CCDS DB by Nucleotide ID:NM_001101572Re-query CCDS DB by Protein ID:NP_001095042Link to BLAST:NP_001095042.1

Chromosomal Locations for CCDS 48617.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 79356591 79356805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79377797 79378088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79378692 79379501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79381153 79381380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79385352 79385475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 79395838 79396766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2598 nt):
ATGCTGCTCTCTTGGCTTCTTATCGTTTGGTTTTTACAGATGCCAACTTTCACCTGGATCATTGCAACTC
ATATCTGCCCAACTGACACTAAACACCTAATACACTCTGATGGAACTGTTGTCATTGGTGCATTTTTTCC
TATTTTACATAATTCACGTGTAAGTAAAATAATAGATTGGAGATATTTTCCTATGGACTCAGATGATTAT
TTTGGGATAAATGCACGAAACTACCAACTCGTTTTGGCCATGTTATTTGCCGTCAATGAGATAAACTTGA
ACTCTCATATTTTACCAAACACCTCTCTTGGACTTGAGATTTATAATCTGCCAGCTATTGGAAGGAATAT
TTTTAGGACTGTATTCTCTTGGCTCACGGGTTTGAGTAGTGTGATCCCTAATTATACATGTAGAAAAGAA
AGCAAATCAGCTGCTACACTTACTGGGCTATCATGGAAAACATCTGAAACAATTTGGACCATATTGGATC
TTTACAAATTTCCTCAGCTTACTTTTGGGCCTTTTGATCCTGTTCAGATTGATAGAAACCAGTTTCGATC
TCTCTACCAGGTGGCCCCCAAAGACACAGCTCTGTTGTCTGGTATTGCCTCTTTGATGCTTCATTTCAAC
TGGAACTGGGTGGGACTCCTCATCCCAGCTGACCAGAGAGGTGCTCAGTTTTTATCAGACTTTAGAAAGG
AGCTAGACAAAACTAGAATCTGCATAGCTTTTGTGCAAACAGTATTATATCTGGGGGAAACCCTACTTCG
TTTGCTATCACAAGATCATATCCACATTCTAGAATCATCGACCGCAGACGTGATTGTAATTTATGGACCC
ACTTCTATTCTATTAACCTTAATAGAAAGCACATATAGAAAGTACAACATGAAAAAAATTTGGGTTATGA
ATACAAAATGGTTTTGCCCCAATATAGAACTATATAATATGTTAGAATTATCCCATGGGGCTCTCATTTT
TTCACCCCATTATGAGGAGATTGCTGGTTTCAAAAAGTTTATGCAAGAAGCCACCCCCATCAAGTACCCA
GAAGATATTTTTCTTCATATATTGTGGTACTGGTATTTCAAATGCTCATTTTTGCATTTTGAATGTAAAA
TATTTAAAAACTGTCTGCAGAATGCCTCTTTGGAATTGTTGCCAGGGAATATTTTTACAATGACCATGAC
TGAAGAGAGTTACTATGTGTATAATGCTGTGTATGCAGTGGCCCACAGTCTGCATGAGGAGACACTCAGT
CAAATACAATATCAACCACAGTCAAATATTGATAGGACTTTGTTATTCCCCTGGCAGCTTCACCCTTTTC
TGAAGAAGATTCAAGTGAAAAATTCTGTTGGGGACGATGTGGTTCTGGACTGGAAAAGGAAGGCAGATCC
AGAGTATGATATTACCAACATTTGGAATTTCCCAACAGGTCTTTCACTATTAGTGAAAGTGGGTACATTT
GTTCCCAGTGCTCCCAAAGGGAAACAATTGTCAATGTCTGAATATATGATTAACTGGCCCATAGGATTTA
CAGAGATTCCTCACTCTGTATGCAGTGAGAGCTGCAATCCTGGATTCAGGAAAGTTGCCCTGGAGAGCAA
GCCTACCTGTTGCTTTGACTGCACTCCTTGCCCAGACAATGAGATTTCCAATGAAACAGGTATGGATCAG
TGTGTGCACTGTCCAGAAACTCATTATGCAAGTGCAGAGAAGAGACACTGCCTGAAGAAAACTATAACCT
TTCTGTCCTATAATGATCCCCTGGGGAAGGGAATCACACTTCTTTCCATTGGATTCTCAACACTCACAGC
TCTTGTTATTTGGGTATTTGTAGAACACAGAGGCACTCCAATTATAAAGGCCAATAATAGATCCCTCAGT
TACATACTGCTCATCACTCTCATCCTCTGTTTCCTCTGTCCATTGCTCTTCATTGGCCTTCCAAATACAG
CAACGTGTATAATGCAACAGTACATGTTTGGACTTCTGTTCACTGTGGCCCTATCCACTGTGTTAGCCAA
AACCATCACTGTAGTTATGGCCTTCAAGATTACTGCTCCAGGAAGAAAGATAAGGTGGTTGCTGACATCA
CAGGTCCCTAAATTTGTCATTCCAGTTTGCATCCTGATACAAGTACTTCTCTCTGGTATATGGCTGGGAA
CATCTCCTCCATTTATTGACAAGGATTATCAGTCTGAACATGGACACATCATCATTCTTTGCAGCAAGGG
CTCATATATTTACTTCTACTGCACTCTGGCTTACCTGGGAGTCATGGCCTTTGGTAGTTACCTCTTGGCT
TTCTTGTCCAGAAGACTGCCCGACAGATTTAATGAATCTAAGTCCCTGGCTTTCAGCATGCTTGTGTTCT
GCAGTGTATGGGTCATGTTTCTCCCTGTCTGCCACAGCACCTCTGGGAAGGTCATGGTGGCTATGGAAAT
GTTCTCTATCTTGGCTTCCAGTGCAAGCATTCTTATCATAGTCTTTGCTCCTAAGTGCTACATCGTTTTG
TTTAGGCCAGAGTTGAACACACTTACTCACAACAGGGATAAAAGACACCACAGGAGCAAAACTTTACTTA
AAACATAG

Translation (865 aa):
MLLSWLLIVWFLQMPTFTWIIATHICPTDTKHLIHSDGTVVIGAFFPILHNSRVSKIIDWRYFPMDSDDY
FGINARNYQLVLAMLFAVNEINLNSHILPNTSLGLEIYNLPAIGRNIFRTVFSWLTGLSSVIPNYTCRKE
SKSAATLTGLSWKTSETIWTILDLYKFPQLTFGPFDPVQIDRNQFRSLYQVAPKDTALLSGIASLMLHFN
WNWVGLLIPADQRGAQFLSDFRKELDKTRICIAFVQTVLYLGETLLRLLSQDHIHILESSTADVIVIYGP
TSILLTLIESTYRKYNMKKIWVMNTKWFCPNIELYNMLELSHGALIFSPHYEEIAGFKKFMQEATPIKYP
EDIFLHILWYWYFKCSFLHFECKIFKNCLQNASLELLPGNIFTMTMTEESYYVYNAVYAVAHSLHEETLS
QIQYQPQSNIDRTLLFPWQLHPFLKKIQVKNSVGDDVVLDWKRKADPEYDITNIWNFPTGLSLLVKVGTF
VPSAPKGKQLSMSEYMINWPIGFTEIPHSVCSESCNPGFRKVALESKPTCCFDCTPCPDNEISNETGMDQ
CVHCPETHYASAEKRHCLKKTITFLSYNDPLGKGITLLSIGFSTLTALVIWVFVEHRGTPIIKANNRSLS
YILLITLILCFLCPLLFIGLPNTATCIMQQYMFGLLFTVALSTVLAKTITVVMAFKITAPGRKIRWLLTS
QVPKFVIPVCILIQVLLSGIWLGTSPPFIDKDYQSEHGHIIILCSKGSYIYFYCTLAYLGVMAFGSYLLA
FLSRRLPDRFNESKSLAFSMLVFCSVWVMFLPVCHSTSGKVMVAMEMFSILASSASILIIVFAPKCYIVL
FRPELNTLTHNRDKRHHRSKTLLKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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