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Report for CCDS34221.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34221.1 Public Homo sapiens 5 CTXN3 24 110 108 CCDS HistoryNCBI Gene:613212Re-query CCDS DB by CCDS ID:34221.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34221.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379445.8 ENSP00000368758.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000379445.8Link to Ensembl Protein Viewer:ENSP00000368758.3Re-query CCDS DB by Nucleotide ID:ENST00000379445Re-query CCDS DB by Protein ID:ENSP00000368758
Original member Current member EBI ENST00000395322.3 ENSP00000378732.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395322.3Link to Ensembl Protein Viewer:ENSP00000378732.3Re-query CCDS DB by Nucleotide ID:ENST00000395322Re-query CCDS DB by Protein ID:ENSP00000378732
Original member Current member EBI ENST00000620385.1 ENSP00000482081.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000620385.1Link to Ensembl Protein Viewer:ENSP00000482081.1Re-query CCDS DB by Nucleotide ID:ENST00000620385Re-query CCDS DB by Protein ID:ENSP00000482081
Original member Current member NCBI NM_001048252.3 NP_001041717.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001048252.3Link to Protein Sequence:NP_001041717.1Re-query CCDS DB by Nucleotide ID:NM_001048252Re-query CCDS DB by Protein ID:NP_001041717Link to BLAST:NP_001041717.1
Original member Current member NCBI NM_001127385.2 NP_001120857.1 Accepted alive Link to Nucleotide Sequence:NM_001127385.2Link to Protein Sequence:NP_001120857.1Re-query CCDS DB by Nucleotide ID:NM_001127385Re-query CCDS DB by Protein ID:NP_001120857Link to BLAST:NP_001120857.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001041717.1 81 Q4LDR2 81 100% 0 0
NP_001120857.1 81 Q4LDR2 81 100% 0 0

Chromosomal Locations for CCDS 34221.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 127657522 127657767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (246 nt):
ATGGATGGAGGACAGCCCATCCCCTCATCCCTAGTGCCCCTTGGGAACGAATCAGCAGATTCTAGCATGT
CCCTGGAGCAGAAAATGACATTTGTTTTTGTGATTCTGTTGTTTATTTTCTTGGGCATTCTCATTGTCCG
GTGCTTCCGGATTCTTTTGGATCCATATCGAAGCATGCCAACCTCTACCTGGGCTGATGGACTTGAAGGC
CTGGAGAAAGGGCAGTTCGACCATGCCCTTGCTTAG

Translation (81 aa):
MDGGQPIPSSLVPLGNESADSSMSLEQKMTFVFVILLFIFLGILIVRCFRILLDPYRSMPTSTWADGLEG
LEKGQFDHALA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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