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Report for CCDS38865.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38865.1 Public Mus musculus 4 Kcnq4 23 108 98 CCDS HistoryNCBI Gene:60613Re-query CCDS DB by CCDS ID:38865.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38865.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030376.7 ENSMUSP00000030376.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030376.7Link to Ensembl Protein Viewer:ENSMUSP00000030376.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030376Re-query CCDS DB by Protein ID:ENSMUSP00000030376
Original member Current member NCBI NM_001081142.3 NP_001074611.1 Accepted alive Link to Nucleotide Sequence:NM_001081142.3Link to Protein Sequence:NP_001074611.1Re-query CCDS DB by Nucleotide ID:NM_001081142Re-query CCDS DB by Protein ID:NP_001074611Link to BLAST:NP_001074611.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074611.1 696 Q9JK97 696 100% 0 0

Chromosomal Locations for CCDS 38865.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 120697894 120698106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120698499 120698628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120699892 120700023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120702386 120702485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120704355 120704575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120711223 120711384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120713012 120713100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120714985 120715080 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120715251 120715361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120715766 120715891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120716552 120716727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120716925 120717051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120717458 120717548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 120746860 120747176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGCCGAGGCCCCCCCGCGCCGCCTCGGCCTGGGCCCCCCGCCCGGGGACGCCCCCCGCGCGGAGTTGG
TGGCGCTCACGGCCGTGCAGAGTGAACAGGGCGAGGCGGGCGGGGGCGGCTCTCCGCGTCGCCTCGGCCT
TCTGGGCAGCCCCCTGCCGCCGGGCGCGCCCCTCCCTGGGCCGGGCTCCGGCTCGGGCTCCGCCTGCGGC
GGCCAGCGCTCCTCCGCCGCGCAGAAGCGCTACCGCCGCCTGCAGAACTGGGTCTACAACGTGCTGGAGC
GGCCCCGCGGGTGGGCCTTCGTCTACCACGTCTTCATATTTTTGCTAGTCTTCAGCTGCCTGGTGCTGTC
TGTACTGTCCACCATCCAGGAGCACCAGGAACTTGCCAACGAGTGTCTCCTTATCTTGGAATTCGTGATG
ATTGTGGTCTTTGGCTTGGAGTATATAATCCGTGTCTGGTCGGCCGGATGCTGTTGTCGCTACAGAGGAT
GGCAGGGACGCTTTCGCTTCGCCAGGAAACCCTTCTGTGTCATCGACTTCATCGTGTTCGTGGCCTCGGT
GGCAGTGATAGCTGCGGGCACACAAGGCAACATCTTTGCTACGTCCGCGTTGCGCAGTATGCGCTTCCTA
CAGATCCTGCGCATGGTGCGTATGGATCGCCGCGGTGGCACCTGGAAGCTGTTGGGATCCGTGGTCTATG
CGCACAGTAAGGAGCTGATCACCGCCTGGTACATCGGGTTCCTGGTGCTCATCTTTGCCTCTTTCCTGGT
CTACCTGGCTGAGAAGGATGCCAACTCTGACTTCTCCTCCTATGCCGACTCGCTCTGGTGGGGGACGATC
ACACTGACGACCATTGGCTATGGTGACAAGACGCCACATACATGGCTGGGCAGGGTTCTGGCTGCCGGCT
TCGCCTTACTGGGCATCTCCTTCTTTGCCCTGCCTGCCGGCATCCTGGGCTCTGGCTTTGCCCTGAAGGT
CCAGGAGCAGCACAGGCAGAAGCACTTTGAGAAGCGCAGGATGCCAGCAGCTAATCTCATCCAGGCTGCG
TGGCGCCTGTACTCCACGGACACAAGCCGGGCCTATTTGACAGCCACCTGGTATTACTATGACAGCATTC
TCCCATCTTTCAGAGAGCTGGCCCTCTTGTTTGAGCACATACAACGGGCCCGCAATGGGGGCTTACGGCC
CCTGGAGGTGAGGCGGGCGCCAGTACCTGATGGAGCGCCCTCTCGCTACCCGCCCGTTGCCACCTGCCAC
CGGCCAGGCAGTGCCTCCTTCTGCCCTGGGGAAAGCAGCCGGATGGGCATCAAAGACCGAATCCGCATAA
GCAGCTCCCAGAAGCGGACAGGCCCCTCCAAGCAGCATCTGGCCCCTCCGCCGATTCCCACCTCGCCAAG
CAGTGAGCAGGTGGGCGAGGCATCCAGCCCCAGCAAGGTGCAGAAAAGCTGGAGCTTCAATGACCGCACC
CGCTTCCGGGCCTCTCTAAGACTCAAGCCTCGCTGCTCTGCTGAGGAGGGCCCCTCAGAGGAAGTGGCCG
AGGAGAAGAGCTACCAGTGTGAGCTTACGGTGGATGATGTCATGCCTGCTGTGAAGACGGTCATCCGTTC
TGTCAGGATTCTGAAGTTCCTGGTAGCCAAAAGGAAATTCAAGGAGACGCTGCGGCCATATGATGTGAAG
GATGTCATTGAGCAGTATTCAGCAGGACACCTGGACATGCTGGGACGAATCAAGAGCCTGCAAGCCCGGG
TGGACCAAATTGTGGGTCGGGGCCCTGGGGACCGCAAGACTCGGGAGAAGGGCGATAAGGGTCCTTCAGA
CACGGAGGCAGTGGATGAAATCAGCATGATGGGGCGCGTAGTCAAGGTGGAAAAGCAGGTGCAGTCCATC
GAACATAAGTTGGATCTGCTGCTGGGCTTCTACTCGCGCTGCCTCCGCTCTGGCACCTCGGCCAGCCTGG
GCACTGTGCAAGTGCCGCTCTTCGACCCCGACATCACCTCGGACTACCACAGCCCTGTAGACCACGAGGA
CATCTCTGTCTCCGCACAGACGCTCAGCATCTCTCGCTCAGTCAGCACCAACATGGACTGA

Translation (696 aa):
MAEAPPRRLGLGPPPGDAPRAELVALTAVQSEQGEAGGGGSPRRLGLLGSPLPPGAPLPGPGSGSGSACG
GQRSSAAQKRYRRLQNWVYNVLERPRGWAFVYHVFIFLLVFSCLVLSVLSTIQEHQELANECLLILEFVM
IVVFGLEYIIRVWSAGCCCRYRGWQGRFRFARKPFCVIDFIVFVASVAVIAAGTQGNIFATSALRSMRFL
QILRMVRMDRRGGTWKLLGSVVYAHSKELITAWYIGFLVLIFASFLVYLAEKDANSDFSSYADSLWWGTI
TLTTIGYGDKTPHTWLGRVLAAGFALLGISFFALPAGILGSGFALKVQEQHRQKHFEKRRMPAANLIQAA
WRLYSTDTSRAYLTATWYYYDSILPSFRELALLFEHIQRARNGGLRPLEVRRAPVPDGAPSRYPPVATCH
RPGSASFCPGESSRMGIKDRIRISSSQKRTGPSKQHLAPPPIPTSPSSEQVGEASSPSKVQKSWSFNDRT
RFRASLRLKPRCSAEEGPSEEVAEEKSYQCELTVDDVMPAVKTVIRSVRILKFLVAKRKFKETLRPYDVK
DVIEQYSAGHLDMLGRIKSLQARVDQIVGRGPGDRKTREKGDKGPSDTEAVDEISMMGRVVKVEKQVQSI
EHKLDLLLGFYSRCLRSGTSASLGTVQVPLFDPDITSDYHSPVDHEDISVSAQTLSISRSVSTNMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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