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Report for CCDS22616.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22616.1 Public Mus musculus 8 Thap11 23 108 98 CCDS HistoryNCBI Gene:59016Re-query CCDS DB by CCDS ID:22616.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22616.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040445.8 ENSMUSP00000048994.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040445.8Link to Ensembl Protein Viewer:ENSMUSP00000048994.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000040445Re-query CCDS DB by Protein ID:ENSMUSP00000048994
Original member Current member NCBI NM_021513.2 NP_067488.1 Accepted alive Link to Nucleotide Sequence:NM_021513.2Link to Protein Sequence:NP_067488.1Re-query CCDS DB by Nucleotide ID:NM_021513Re-query CCDS DB by Protein ID:NP_067488Link to BLAST:NP_067488.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067488.1 305 Q9JJD0 305 100% 0 0

Chromosomal Locations for CCDS 22616.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 105855361 105856278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGCCTGGCTTTACGTGCTGCGTTCCGGGCTGCTACAACAATTCACACCGGGACAAGGCGCTGCACTTCT
ACACGTTTCCCAAGGACGCTGAGTTGCGGCGCCTCTGGCTCAAGAACGTGTCCCGTGCTGGCGTCAGTGG
GTGCTTCTCCACCTTCCAACCCACCACCGGCCACCGTCTCTGCAGCGTCCACTTTCAGGGCGGCCGCAAG
ACCTACACGGTGCGCGTTCCCACCATTTTCCCGCTGCGTGGCGTCAATGAGCGCAAAGTAGCTCGGAGAC
CTGCGGGAGCTGCGGCAGCCCGCCGTAGGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCA
GCAGCTGCAACAGCAGCAGCCGTCTCCGTCCTCCTCCACTGCCCAGACCACCCAGTTGCAGCCGAACCTG
GTGTCTGCCTCTGCAGCTGTGCTTCTTACGCTTCAGGCCGCCGTAGACAGCAACCAGGCTCCGGGATCCG
TGGTTCCCGTGTCCACGACTCCCTCGGGAGATGATGTGAAGCCCATCGACCTCACAGTGCAAGTCGAGTT
TGCAGCTGCTGAAGGGGCAGCCGCCGCTGCCGCCGCCTCAGAGCTAGAGGCTGCTACGGCTGGGCTGGAG
GCCGCTGAGTGCACTCTGGGCCCTCAGCTGGTGGTGGTAGGGGAAGAGGGCTTCCCTGACACTGGCTCTG
ACCACTCGTACTCCTTGTCCTCGGGTACCACGGAGGAGGAGCTCCTGCGCAAGCTGAACGAGCAGCGGGA
CATCTTGGCCCTGATGGAAGTGAAGATGAAGGAGATGAAGGGTAGCATCCGCCATCTGCGTCTCACCGAG
GCCAAGCTCCGTGAAGAACTTCGAGAGAAGGATCGTCTGCTTGCCATGGCTGTCATCCGTAAGAAGCACG
GCATGTGA

Translation (305 aa):
MPGFTCCVPGCYNNSHRDKALHFYTFPKDAELRRLWLKNVSRAGVSGCFSTFQPTTGHRLCSVHFQGGRK
TYTVRVPTIFPLRGVNERKVARRPAGAAAARRRQQQQQQQQQQQQQQQLQQQQPSPSSSTAQTTQLQPNL
VSASAAVLLTLQAAVDSNQAPGSVVPVSTTPSGDDVKPIDLTVQVEFAAAEGAAAAAAASELEAATAGLE
AAECTLGPQLVVVGEEGFPDTGSDHSYSLSSGTTEEELLRKLNEQRDILALMEVKMKEMKGSIRHLRLTE
AKLREELREKDRLLAMAVIRKKHGM


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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