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Report for CCDS7903.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7903.1 Public Homo sapiens 11 RAG2 24 110 108 CCDS HistoryNCBI Gene:5897Re-query CCDS DB by CCDS ID:7903.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7903.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311485.8 ENSP00000308620.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000311485.8Link to Ensembl Protein Viewer:ENSP00000308620.4Re-query CCDS DB by Nucleotide ID:ENST00000311485Re-query CCDS DB by Protein ID:ENSP00000308620
Original member Current member EBI ENST00000532616.2 ENSP00000432174.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000532616.2Link to Ensembl Protein Viewer:ENSP00000432174.2Re-query CCDS DB by Nucleotide ID:ENST00000532616Re-query CCDS DB by Protein ID:ENSP00000432174
Original member Current member EBI ENST00000529083.2 ENSP00000436327.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000529083.2Link to Ensembl Protein Viewer:ENSP00000436327.2Re-query CCDS DB by Nucleotide ID:ENST00000529083Re-query CCDS DB by Protein ID:ENSP00000436327
Original member Current member EBI ENST00000527033.6 ENSP00000436895.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000527033.6Link to Ensembl Protein Viewer:ENSP00000436895.2Re-query CCDS DB by Nucleotide ID:ENST00000527033Re-query CCDS DB by Protein ID:ENSP00000436895
Original member Current member NCBI NM_000536.4 NP_000527.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000536.4Link to Protein Sequence:NP_000527.2Re-query CCDS DB by Nucleotide ID:NM_000536Re-query CCDS DB by Protein ID:NP_000527Link to BLAST:NP_000527.2
Original member Current member NCBI NM_001243785.2 NP_001230714.1 Accepted alive Link to Nucleotide Sequence:NM_001243785.2Link to Protein Sequence:NP_001230714.1Re-query CCDS DB by Nucleotide ID:NM_001243785Re-query CCDS DB by Protein ID:NP_001230714Link to BLAST:NP_001230714.1
Original member Current member NCBI NM_001243786.2 NP_001230715.1 Accepted alive Link to Nucleotide Sequence:NM_001243786.2Link to Protein Sequence:NP_001230715.1Re-query CCDS DB by Nucleotide ID:NM_001243786Re-query CCDS DB by Protein ID:NP_001230715Link to BLAST:NP_001230715.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000527.2 527 P55895 527 100% 0 0
NP_001230714.1 527 P55895 527 100% 0 0
NP_001230715.1 527 P55895 527 100% 0 0

Chromosomal Locations for CCDS 7903.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 36592585 36594168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1584 nt):
ATGTCTCTGCAGATGGTAACAGTCAGTAATAACATAGCCTTAATTCAGCCAGGCTTCTCACTGATGAATT
TTGATGGACAAGTTTTCTTCTTTGGACAAAAAGGCTGGCCCAAAAGATCCTGCCCCACTGGAGTTTTCCA
TCTGGATGTAAAGCATAACCATGTCAAACTGAAGCCTACAATTTTCTCTAAGGATTCCTGCTACCTCCCT
CCTCTTCGCTACCCAGCCACTTGCACATTCAAAGGCAGCTTGGAGTCTGAAAAGCATCAATACATCATCC
ATGGAGGGAAAACACCAAACAATGAGGTTTCAGATAAGATTTATGTCATGTCTATTGTTTGCAAGAACAA
CAAAAAGGTTACTTTTCGCTGCACAGAGAAAGACTTGGTAGGAGATGTTCCTGAAGCCAGATATGGTCAT
TCCATTAATGTGGTGTACAGCCGAGGGAAAAGTATGGGTGTTCTCTTTGGAGGACGCTCATACATGCCTT
CTACCCACAGAACCACAGAAAAATGGAATAGTGTAGCTGACTGCCTGCCCTGTGTTTTCCTGGTGGATTT
TGAATTTGGGTGTGCTACATCATACATTCTTCCAGAACTTCAGGATGGGCTATCTTTTCATGTCTCTATT
GCCAAAAATGACACCATCTATATTTTAGGAGGACATTCACTTGCCAATAATATCCGGCCTGCCAACCTGT
ACAGAATAAGGGTTGATCTTCCCCTGGGTAGCCCAGCTGTGAATTGCACAGTCTTGCCAGGAGGAATCTC
TGTCTCCAGTGCAATCCTGACTCAAACTAACAATGATGAATTTGTTATTGTTGGTGGCTATCAGCTTGAA
AATCAAAAAAGAATGATCTGCAACATCATCTCTTTAGAGGACAACAAGATAGAAATTCGTGAGATGGAGA
CCCCAGATTGGACCCCAGACATTAAGCACAGCAAGATATGGTTTGGAAGCAACATGGGAAATGGAACTGT
TTTTCTTGGCATACCAGGAGACAATAAACAAGTTGTTTCAGAAGGATTCTATTTCTATATGTTGAAATGT
GCTGAAGATGATACTAATGAAGAGCAGACAACATTCACAAACAGTCAAACATCAACAGAAGATCCAGGGG
ATTCCACTCCCTTTGAAGACTCTGAAGAATTTTGTTTCAGTGCAGAAGCAAATAGTTTTGATGGTGATGA
TGAATTTGACACCTATAATGAAGATGATGAAGAAGATGAGTCTGAGACAGGCTACTGGATTACATGCTGC
CCTACTTGTGATGTGGATATCAACACTTGGGTACCATTCTATTCAACTGAGCTCAACAAACCCGCCATGA
TCTACTGCTCTCATGGGGATGGGCACTGGGTCCATGCTCAGTGCATGGATCTGGCAGAACGCACACTCAT
CCATCTGTCAGCAGGAAGCAACAAGTATTACTGCAATGAGCATGTGGAGATAGCAAGAGCTCTACACACT
CCCCAAAGAGTCCTACCCTTAAAAAAGCCTCCAATGAAATCCCTCCGTAAAAAAGGTTCTGGAAAAATCT
TGACTCCTGCCAAGAAATCCTTTCTTAGAAGGTTGTTTGATTAG

Translation (527 aa):
MSLQMVTVSNNIALIQPGFSLMNFDGQVFFFGQKGWPKRSCPTGVFHLDVKHNHVKLKPTIFSKDSCYLP
PLRYPATCTFKGSLESEKHQYIIHGGKTPNNEVSDKIYVMSIVCKNNKKVTFRCTEKDLVGDVPEARYGH
SINVVYSRGKSMGVLFGGRSYMPSTHRTTEKWNSVADCLPCVFLVDFEFGCATSYILPELQDGLSFHVSI
AKNDTIYILGGHSLANNIRPANLYRIRVDLPLGSPAVNCTVLPGGISVSSAILTQTNNDEFVIVGGYQLE
NQKRMICNIISLEDNKIEIREMETPDWTPDIKHSKIWFGSNMGNGTVFLGIPGDNKQVVSEGFYFYMLKC
AEDDTNEEQTTFTNSQTSTEDPGDSTPFEDSEEFCFSAEANSFDGDDEFDTYNEDDEEDESETGYWITCC
PTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLAERTLIHLSAGSNKYYCNEHVEIARALHT
PQRVLPLKKPPMKSLRKKGSGKILTPAKKSFLRRLFD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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