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Report for CCDS19989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19989.1 Public Mus musculus 6 Slc35b4 23 108 98 CCDS HistoryNCBI Gene:58246Re-query CCDS DB by CCDS ID:19989.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019143.8 ENSMUSP00000019143.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019143.8Link to Ensembl Protein Viewer:ENSMUSP00000019143.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000019143Re-query CCDS DB by Protein ID:ENSMUSP00000019143
Original member NCBI NM_021435.3 NP_067410.1 Updated not alive Link to Nucleotide Sequence:NM_021435.3Link to Protein Sequence:NP_067410.1Re-query CCDS DB by Nucleotide ID:NM_021435Re-query CCDS DB by Protein ID:NP_067410
Current member NCBI NM_021435.4 NP_067410.1 Accepted alive Link to Nucleotide Sequence:NM_021435.4Link to Protein Sequence:NP_067410.1Re-query CCDS DB by Nucleotide ID:NM_021435Re-query CCDS DB by Protein ID:NP_067410Link to BLAST:NP_067410.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067410.1 331 Q8CIA5-1 331 100% 0 0

Chromosomal Locations for CCDS 19989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 34158380 34158626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34159433 34159508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34160473 34160548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34161676 34161785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34163329 34163389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34163589 34163670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34166374 34166423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34167625 34167727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34170461 34170574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 34176778 34176854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (996 nt):
ATGCGCCCGGCCTTCGCGGTGGGCCTGGTGTTCGCAGGCTGCTGCAGTAATGTGATCTTCCTAGAGCTGC
TGGCCCGGACACATCCAGGATGCGGGAACATCGTCACGTTTGCGCAGTTCTTATTTATTGCTGTGGAAGG
CTTCCTTTTTGAAGCTAACTTGGGAAGGAAGCCACCAGCTATCCCAATAAGGTACTATGCCATCATGGTA
ACCATGTTCTTCACTGTCAGCGTGGTGAACAACTATGCCCTGAACCTGAACATCGCCATGCCGCTGCATA
TGATATTCAGATCAGGCTCTCTGATTGCCAACATGATTCTAGGAATTATCATTTTGAAGAAAAGATACAG
TATGTTCAAGTATACCTCCATTGCCCTGGTGTCTGCAGGGATATTTATTTGCACTTTCATGTCAGCAAAG
CAGGTGACTGTCCAGACCGGCTTGAGTGACAAGGATGGATTCCAGGCCTTTGCATGGTGGTTACTAGGTA
TTGCGGCACTGACCTTCGCTCTGCTGATGTCGGCAAGAATGGGCATCTTCCAAGAGACTCTGTACAGACA
GTTTGGGAAGCACTCCAAGGAGGCGTTATTTTATAATCACGCCCTTCCACTTCCCGGGTTCATCTTCTTG
GCCTCTGATATTTATGACCACGTTGTCCTGTTCAATAAGTCTGAACTCTATCAAGTTCCAGTCATCGGTG
TGACGATGCCCGTCATGTGGTTCTACCTCCTCATGAATGTCGTGACTCAATATGTGTGCATCCGGGGTGT
GTTCATCCTTACAACAGAGTGTACCTCCCTCACCGTCACACTGGTTGTGACTCTGCGCAAGTTTGTGAGC
CTCATCTTTTCTATCTTGTACTTCCAGAACCAGTTCACTATGTGGCACTGGCTGGGCACCTCGTTTGTCT
TCATTGGAACCTTAATGTACACAGAGGTGTGGAAAAACCTCGGGACCACAAAAAGTGAGCTGCAAAAGGA
TGACAAGAAGGACTGA

Translation (331 aa):
MRPAFAVGLVFAGCCSNVIFLELLARTHPGCGNIVTFAQFLFIAVEGFLFEANLGRKPPAIPIRYYAIMV
TMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSMFKYTSIALVSAGIFICTFMSAK
QVTVQTGLSDKDGFQAFAWWLLGIAALTFALLMSARMGIFQETLYRQFGKHSKEALFYNHALPLPGFIFL
ASDIYDHVVLFNKSELYQVPVIGVTMPVMWFYLLMNVVTQYVCIRGVFILTTECTSLTVTLVVTLRKFVS
LIFSILYFQNQFTMWHWLGTSFVFIGTLMYTEVWKNLGTTKSELQKDDKKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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