NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS40427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40427.1 Public Mus musculus 8 Sall1 23 108 98 CCDS HistoryNCBI Gene:58198Re-query CCDS DB by CCDS ID:40427.1See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034090.7 ENSMUSP00000034090.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034090.7Link to Ensembl Protein Viewer:ENSMUSP00000034090.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000034090Re-query CCDS DB by Protein ID:ENSMUSP00000034090
Original member Current member NCBI NM_001371069.1 NP_001357998.1 Accepted alive Link to Nucleotide Sequence:NM_001371069.1Link to Protein Sequence:NP_001357998.1Re-query CCDS DB by Nucleotide ID:NM_001371069Re-query CCDS DB by Protein ID:NP_001357998Link to BLAST:NP_001357998.1
Original member Current member NCBI NM_001371070.1 NP_001357999.1 Accepted alive Link to Nucleotide Sequence:NM_001371070.1Link to Protein Sequence:NP_001357999.1Re-query CCDS DB by Nucleotide ID:NM_001371070Re-query CCDS DB by Protein ID:NP_001357999Link to BLAST:NP_001357999.1
Original member Current member NCBI NM_021390.3 NP_067365.2 Accepted alive Link to Nucleotide Sequence:NM_021390.3Link to Protein Sequence:NP_067365.2Re-query CCDS DB by Nucleotide ID:NM_021390Re-query CCDS DB by Protein ID:NP_067365Link to BLAST:NP_067365.2

Chromosomal Locations for CCDS 40427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 89028378 89028818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 89029944 89033398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 89042352 89042427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3972 nt):
ATGTCGCGGAGGAAGCAAGCGAAGCCTCAACATTTCCAATCCGACCCCGAAGTGGCCTCGCTCCCCCGGC
GAGATGGGGACACAGAGAAGGGTCAACCAAGTCGCCCCACTAAGAGCAAGGATGCCCATGTCTGTGGCCG
GTGCTGCGCTGAATTCTTTGAATTATCAGACCTTCTGCTCCATAAAAAGAGCTGCACTAAGAATCAATTA
GTTTTGATTGTCAATGAAAGTCCAGCCTCCCCAGCAAAAGCCTTCCCTCCTGGCCCGTCTCTCAATGATC
CCGACGACCAAATGAAAGACGCGGCGAATAAAGCAGACCAAGAAGACTGCAGCGACCTTTCAGAACCCAA
GGGGCTTGACAGGGAAGAGTCCATGGAGGTGGAGGTCCCAGTTGCCACCACCACCACCACCACCACTGGC
GGCAGCGGCGGGAGTGGTGGCAGCACTCTGAGCGGTGTCACCAACATCACCACCCCGAGCTGCCACAGCG
GCTCTTCCACGGGTACCTCAGCGATCACAACCTCTCTACCTCAACTGGGGGACCTGACGACACTGGGCAA
CTTCTCGGTGATCAACAGCAACGTCATCATTGAGAATCTCCAGAGCACCAAGGTAGCGGTGGCCCAGTTC
TCCCAGGAGGCGAGGTGTGGGGGGGCCTCCGGAGGCAAGCTGCTCATCTCAACCCTCATGGAACAACTCC
TGGCTCTGCAGCAGCAGCAGATTCACCAGCTGCAGCTCATAGAGCAAATACGTCACCAAATACTGCTGCT
GGCCTCTCAGAGCGCAGACCTGCCGGCAGCACCCTCTATCCCGTCTCAAGGTACTTTACGAACATCTGCC
AACCCCTTGACCACACTGAGCTCCCATCTGTCTCAACAGCTGGCGGTGGCAGCTGGATTAGCACAGAGCC
TTGCTAGCCAATCTGCCAACATCAGCGGTGTGAAGCAGCTCCCCCACGTCCAGCTACCTCAGAGCAGCTC
CGGCACCTCCATCGTCCCGCCCAGTGGTGGCACTTCTCCCAACATGAGCATAGTGACGGCTGCAGTGCCC
ACCCCGTCCTCAGAAAAAGTGGCTTCCAATGCTGGTGCCTCCCATGTCAGCTCCCCGGCCGTCTCAGCAT
CGTCCTCACCAGCATTCGCAATAAGCAGTCTGTTGAGTCCTGCATCTAACCCACTTCTACCTCAGCCGAC
CCCAGCTAACGCTGTTTTCCCTACCCCTTTGCCTAACATTGCAACAACCGCAGAAGATTTGAACTCCCTG
TCTGCCTTGGCCCAGCAAAGAAAAAGCAAGCCACCAAATGTCACTGCCTTTGAAGCGAAAAGTACTTCAG
ACGAGGCGTTCTTTAAACACAAGTGCAGGTTCTGTGCGAAGGTCTTCGGGAGCGACAGTGCCTTGCAGAT
CCACTTGCGCTCCCATACTGGAGAGAGGCCATTCAAGTGCAACATCTGTGGGAACAGGTTCTCTACTAAG
GGCAATCTGAAAGTCCACTTCCAGCGCCACAAAGAGAAGTACCCCCACATCCAGATGAACCCCTACCCTG
TACCGGAGCACTTGGACAATGTCCCCACGAGCACCGGCATCCCCTACGGCATGTCCATCCCTCCAGAGAA
GCCAGTTACCAGCTGGCTAGACACCAAGCCAGTCCTGCCCACTCTGACCACTTCCGTCGGCCTACCATTG
CCTCCAACTCTCCCAAGCCTCACGCCCTTCATCAAGACGGAAGAGCCAGCCCCCATCCCTATTAGCCATT
CTGCTGCCAGTCCCCAAGGCTCAGTCAAAAGTGACTCCGGGGCCCCTGATTTGGCCACAAGAAACCCAAG
TGGCGTCCCTGAGGAAGTGGAAGGGTCTGCTGTGCCACCCTTTGGTGGCAAGGGTGAAGAGAGTAACATG
GCAAGCTCCGCCGTCCCGACAGCGGGCAACAGTACTCTGAACTCCCCAGTGGCTGACGGTGGTCCAGGAG
GGACCACCTTCACCAACCCTCTGTTGCCCCTCATGTCTGAGCAGTTCAAGGCCAAGTTTCCTTTTGGGGG
ACTCTTAGATTCGGCCCAGGCCTCAGAGACATCCAAGCTGCAGCAACTGGTAGAAAACATTGACAAGAAG
GCCACGGATCCCAATGAGTGTATCATCTGCCACCGGGTTCTCAGCTGTCAGAGCGCCTTGAAAATGCACT
ACCGGACACACACTGGGGAGAGGCCCTTCAAGTGTAAGATCTGCGGCCGGGCTTTCACCACGAAAGGGAA
CCTCAAGACCCACTACAGCGTCCATCGGGCTATGCCTCCACTCAGAGTCCAGCATTCCTGCCCCATCTGT
CAGAAGAAGTTCACAAACGCAGTGGTCCTCCAGCAGCATATTCGTATGCACATGGGAGGCCAGATCCCCA
ACACCCCAGTCCCTGACAACTACCCTGAGTCCATGGAGTCTGACACAGGCTCCTTTGATGAGAAAAATTT
CGACGACTTAGACAACTTCTCAGATGAGAATATGGAAGAGTGTCCTGAGGGCAGCATCCCAGACACACCC
AAGTCAGCGGACGCTTCCCAAGATAGCCTGTCATCTTCGCCTCTGCCCCTCGAGATGTCGAGCATCGCTG
CTCTGGAAAATCAGATGAAGATGATCAATGCTGGCCTGGCGGAGCAGCTGCAGGCCAGCCTGAAGTCTGT
GGAGAACGGATCCATGGAAGGGGATGTGCTGACCAACGACTCTTCCTCAGTGGGTGGCGACATGGAGAGC
CAGAGTGCAGGCAGCCCAGCCATCTCAGAGTCTACCTCTTCCATGCAGGCTCTGTCCCCGTCCAACAGCA
CCCAAGAATTCCACAAGTCACCCGGCATGGAGGAAAAGCCACAGCGAGTGGGGCCAGGCGAGTTCGCCAA
TGGTCTATCTCCCACCCCAGTGAACGGAGGTGCTTTGGACTTGACTTCTAGTCATGCAGAGAAAATCATC
AAAGAAGATTCTCTGGGAATCCTCTTTCCTTTCAGAGACCGGGGTAAATTTAAAAACACTGCTTGCGACA
TTTGTGGCAAGACCTTTGCTTGTCAGAGTGCCTTGGACATTCACTACAGAAGTCATACCAAAGAGAGACC
GTTCATTTGCACAGTTTGCAATCGTGGCTTTTCCACAAAGGGTAATTTGAAGCAGCACATGTTGACACAT
CAGATGCGAGATCTGCCATCGCAGCTCTTTGAGCCCAGTTCCAACCTCGGCCCCAATCAGAACTCTGCAG
TGATTCCCGCCAACTCGCTGTCATCTCTCATCAAAACAGAGGTCAACGGCTTTGTACACGTTTCTCCTCA
GGACAGTAAGGACGCCCCCACTAGTCATGTCCCTCAGGGGCCTCTGTCGTCCTCTGCGACATCCCCAGTT
CTGCTCCCAGCTCTGCCCCGGAGAACTCCCAAACAGCACTATTGTAACACGTGTGGTAAAACCTTCTCTT
CTTCGAGTGCCCTGCAGATCCACGAGAGAACTCACACTGGAGAGAAGCCCTTTGCTTGCACTATCTGTGG
AAGAGCATTCACAACAAAAGGCAATCTGAAGGTCCACATGGGCACCCATATGTGGAACAGCACCCCTGCA
CGCCGGGGCCGGCGGCTCTCAGTGGATGGCCCCATGACATTTCTAGGAGGCAATCCTGTCAAGTTCCCAG
AAATGTTCCAGAAGGATCTAGCGGCGAGGTCAGGAAGTGGGGATCCGTCCAGCTTTTGGAACCAGTATAC
AGCAGCACTGTCCAACGGGCTGGCCATGAAGGCCAACGAGATCTCTGTCATTCAGAACGGCGGCATCCCT
CCAATTCCTGGAAGCCTGGGCAGTGGGAGCAGCTCACCTATCAGTGGGCTGACTGGGAACGTGGAAAAAC
TGGGCAATTCGGAACCCAGTGCTCCTCTGGCTGGCCTGGAGAAAATGGCGAGCAGCGAGAACGGAACCAA
CTTCCGTTTCACCCGCTTCGTGGAGGACAGCAAAGAGATCGTCACAAGCTAA

Translation (1323 aa):
MSRRKQAKPQHFQSDPEVASLPRRDGDTEKGQPSRPTKSKDAHVCGRCCAEFFELSDLLLHKKSCTKNQL
VLIVNESPASPAKAFPPGPSLNDPDDQMKDAANKADQEDCSDLSEPKGLDREESMEVEVPVATTTTTTTG
GSGGSGGSTLSGVTNITTPSCHSGSSTGTSAITTSLPQLGDLTTLGNFSVINSNVIIENLQSTKVAVAQF
SQEARCGGASGGKLLISTLMEQLLALQQQQIHQLQLIEQIRHQILLLASQSADLPAAPSIPSQGTLRTSA
NPLTTLSSHLSQQLAVAAGLAQSLASQSANISGVKQLPHVQLPQSSSGTSIVPPSGGTSPNMSIVTAAVP
TPSSEKVASNAGASHVSSPAVSASSSPAFAISSLLSPASNPLLPQPTPANAVFPTPLPNIATTAEDLNSL
SALAQQRKSKPPNVTAFEAKSTSDEAFFKHKCRFCAKVFGSDSALQIHLRSHTGERPFKCNICGNRFSTK
GNLKVHFQRHKEKYPHIQMNPYPVPEHLDNVPTSTGIPYGMSIPPEKPVTSWLDTKPVLPTLTTSVGLPL
PPTLPSLTPFIKTEEPAPIPISHSAASPQGSVKSDSGAPDLATRNPSGVPEEVEGSAVPPFGGKGEESNM
ASSAVPTAGNSTLNSPVADGGPGGTTFTNPLLPLMSEQFKAKFPFGGLLDSAQASETSKLQQLVENIDKK
ATDPNECIICHRVLSCQSALKMHYRTHTGERPFKCKICGRAFTTKGNLKTHYSVHRAMPPLRVQHSCPIC
QKKFTNAVVLQQHIRMHMGGQIPNTPVPDNYPESMESDTGSFDEKNFDDLDNFSDENMEECPEGSIPDTP
KSADASQDSLSSSPLPLEMSSIAALENQMKMINAGLAEQLQASLKSVENGSMEGDVLTNDSSSVGGDMES
QSAGSPAISESTSSMQALSPSNSTQEFHKSPGMEEKPQRVGPGEFANGLSPTPVNGGALDLTSSHAEKII
KEDSLGILFPFRDRGKFKNTACDICGKTFACQSALDIHYRSHTKERPFICTVCNRGFSTKGNLKQHMLTH
QMRDLPSQLFEPSSNLGPNQNSAVIPANSLSSLIKTEVNGFVHVSPQDSKDAPTSHVPQGPLSSSATSPV
LLPALPRRTPKQHYCNTCGKTFSSSSALQIHERTHTGEKPFACTICGRAFTTKGNLKVHMGTHMWNSTPA
RRGRRLSVDGPMTFLGGNPVKFPEMFQKDLAARSGSGDPSSFWNQYTAALSNGLAMKANEISVIQNGGIP
PIPGSLGSGSSSPISGLTGNVEKLGNSEPSAPLAGLEKMASSENGTNFRFTRFVEDSKEIVTS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH