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Report for CCDS47040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47040.1 Public Homo sapiens 4 NWD2 24 110 108 CCDS HistoryNCBI Gene:57495Re-query CCDS DB by CCDS ID:47040.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000309447.6 ENSP00000309501.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000309447.6Link to Ensembl Protein Viewer:ENSP00000309501.5Re-query CCDS DB by Nucleotide ID:ENST00000309447Re-query CCDS DB by Protein ID:ENSP00000309501
Original member Current member NCBI NM_001144990.2 NP_001138462.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001144990.2Link to Protein Sequence:NP_001138462.1Re-query CCDS DB by Nucleotide ID:NM_001144990Re-query CCDS DB by Protein ID:NP_001138462Link to BLAST:NP_001138462.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138462.1 1742 Q9ULI1 1742 100% 0 0

Chromosomal Locations for CCDS 47040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 37245068 37245218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37325936 37326024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37356366 37356482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37430572 37430775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37433876 37434020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37438801 37439390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 37443285 37447217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5229 nt):
ATGTGGCCGGCCGGCGCGGGCACCAAGCTGCCCTGTCCCCGAGACTCTGCGCTCCGGCGGGCGGCTTTCT
CTGGGAACCTCACGGCCCTGCCCTCTCACCTCGTGCCCGCCGGCCGCAGCGTCCGGGTCTTCATCAGCGC
CAACCCTGAAGATACGGGAGCAGAAAGACAGGCGCTAAGAGAAAATGTATATCCTAAACTGAGAGAATTC
TGCAGAGAAAACTATGGATTGGAATTTCAGGTCATAGATCTGTACTGGGGAGTGGAAGAAGATGAGTGGG
ACAGCCCAGAGCTCCAGAAGACCCGCATGAAGCTGCTGGAGAATTGCTTGAAAACTTCTGCAGGTCCATG
TTTTGTTGGACTATTAGGTGAAAAATATGGGAATATCCGAATCCCTGGAGAAGTTGAAGCCTCAGAGTTT
GAAATGATTTTGGATGCCGCCATAGAGGCAAAGCTGGAGACCAAGTTGCTGGAGGAGTGGTACTGTCGAG
ATGAGAACTCGGTGCCAGCAGCCTATTACCTCAGACCCAAGTCAGAAATGCTGAGAAGCAATAGAAATGC
AATGCAGCCTTCTACCAATGCTGAAAACGAGAAGACATGGCAAGAGATATCAGATGAGATCAAGAAGATA
TTTAAGGCTGCTGTAAAGCTGTTACACGAAAAGGGTAAAATGAAACACAGCCAGGCTAAGAGGTACCTGT
TCTCAGCTATAGAGGATGAGTTTGACTTTGCTCTGGGAAAACAAACTCCAGCATTTCTAAAGAAGTGTGT
TTGCTACATTAGGAAAATTGCTAACATTGAGCGCTTTGTGAAAATCCCAGAGATGGGAAAATACATGGAT
ATAACTGGAACAGAACCGAGGATTATTCGGGACCCAGAAGCCCAAGAGAAGCTGATAAAACTCAGGGATG
AATTTATTCCTACTATTGTTGCATCATCTAATCTGAGAGTGTACACATCTGTTACTCATTGTGACATGAA
ACTAGGCTACTCCCAAGAAATAGAAAATCATTACATCGAAGGACTTGGTAAACAATTTTATGAGGACATG
ATTGATATAATTCAGGCAACGATACAACAGAATTTTGACACTGAAACTGATACACTCTATGATGAAATCC
TTCAACATTCATCATTATGTAAAACATACGCCTCCTTCTATGAGTACAAATGTGAATCTCTAAACATAGT
GCATAACTACATTCTTCCAAGCAAAGCTGGACACATCAACCCTCTTATTATATATGGTGGGCCATGCACT
GGGAAGACCCTTCTGCTAGCTGAAGTAGCAAAGAAGGCTTATGGCTGGCTACATGAGGACACAGGACCAG
AATCTGACCCAGTAGTCATCGTGAGATTTCTAGGAACGACAGACATGAGCTCTGACCTTAGGACTCTCCT
TCTAAGTGTTTGTGAACAATTGGCAGTTAACTACCGGTGTCTGGTTCAAAGCTACCCTAAGAAGATCCAT
GACCTCTGTGACTTATTTATAAATCTTTTGAATGAGTCTTCACTGCAGAGACCTCTAGTCATAATATTCG
ATGCACTAGAGCAGCTCTCAGAGAATGATGATGCCAGGAAGCTTTGGTGGCTCCCAGCTCACCTGCCCCG
CTTTGTCCGGATAGTCCTTTCCACGCTGCCCAACAAACATGGGATCTTGCAGAAACTAAGGTGCCTTATC
CATGAAGAAGACAACTACATCGAGCTGATTCCCCGAGACAGGAAGATGTGCAGCCAGGTCCTCAAACACC
AGCTGCTGCGCGTCAAAAGGAAGGTCACATCAGGCCAGCAGATTTATGTGAACAATGCATTATCCAAGTG
CACACTGCCAATGTTTGTGAACCTGACCTTCAGGGAGGTGAGGCACTGGAGATCTCACAAAGACGTCGAT
GAATCCTCCCTCTCTGTCACCGTTCATGAAAGTATAGAGCAGTTATTCTGGTCCTTGGAGAAGAAGTGTG
GTCAGAAACTGGTCTCTAGGGCTCTTGGTTACATCACCATGGCCAAAATGGGTCTGAGTGAAATGGAACT
GGAGGATGTGTTAGCCCTAGACAACAGTGTAATGAGTGAGCTCAAAGAAAACACCAGACCCAGCAATCCC
CTGAGAGTACCTTACTTGTACATTGCAAGGCTCAAGGAGGGTCTCAGTGGATACCTAATAGAAAGACATG
TGAAAAATGTCACACTCCTAGTCTGGGCCAACAGACACCTGCAGCTCATAGCCCAGAAGCTATATCTGCA
GGATGACAATGACCTGCGTGAAATGCACACCATCTTAGCAGATTATTTTCTGGGGGTTTGGTCAGGGGGC
AGGAGGAAAGCCTTCTGCCTTGAGGACCCCTACTTGAATGGCTGCCTTGACTTGGAGAACAGAAGTTTGC
TGGAGGAAGAAAAGCACTTCATGGAACAGGCTTCCTTTGACAGGCAGGCTCCAGACCAGCCCTGGGTTTT
CCAGTGTAATCCCCTGGAACCTGACATCTTTTTCGTTAATCATCGGAAAATGTCTGAGCTGTTGTACCAC
TTGACGAGGTGTGGAAAAACCGATGACCTGCTTTACGGCATCATCATGAACTTCAGCTGGCTTTATACCA
TGATCAAAATTGGCCAGTTTGACAAAGTGCTTTCAGACATTGAGCTGGCTTACAACTACTCGCAAGAGAA
GGAGCTGAAGTTCCTGGCCAACACCCTCCGCAGCATCAAAAACAAGGTCACTGCATTTCCCGGCTCCCTT
TCAGCAGAGCTTCAGCAAAGACTGCTGCCTGTTGTAAGCTCCCTGCCCAAACTTAGACATCTTCTTTTAG
AGTGTGATAAAGATGGGCCCAAATATTGCTCCATTGTACCACTGCATTCATCCATGGATGTGACATACAG
CCCAGAGCGTCTTCCCTTATCATCCAGTCACCTGCATGTCACAGAGATCCTGCCTACCTGTAACCCCAGC
ACTGTCCTCACAGCTTTAGAAAATGGTTCCATCAGCACCTGGGATGTAGAGACTCGACAGCTACTCAGGC
AAATCACCACAGCCCAGTCTGTCATCCTGGGCATGAAACTCACCAGTGATGAAAAGTACCTTGTGGTGGC
TACAACAAATAACACCTTGTTGATTTATGACAATGTCAATTCTTGCCTCCTGTCTGAAGTAGAAATCAAG
GGGACCAAGCATGGAAGCAGCGCCACCTACATCAATGGATTTACACTGTCCGCCAACCACGCCCTTGCAT
GGCTCGAAGCCAGCAAAGATGTCACTGTCATCGATCTGCTGTACGGATGGCCGCTTTACCAGTTCCACTG
CTGGTATGAAGTGACGTGCGTCCAGTGCTCCCTGGATGGTCTGTATGCTTTCTGTGGCCAATACCTGAAC
ACAACCACCATATTTCATTTAGGGAGTGGAGAAAAGTTATGTACAGTGACATCAGAATTTTCAGGTGGAT
TTGTGAAGTTTCTTCTTATCTTGGACACAGCTCAGGAAATGGTCATGGTAGACAGTGAAGGAAGTCTTTC
TGTTTGGAATACTGAGGACATTTCCAGCCCCCAGCTGACTGATGACTTTGATTGCCGAAGAGAAGACAGT
GAGGTGGTCAGCATTGAGCTTTCAGAAGACCAAAGTGCAGTTCTGATCTGTAAAGCCCTCAGCATTGAGC
TCTTAGATACTGGTCTGTGGAAGGTGGCTGAAAAGTTCAGAGCCAAGCACAACGAACGCTTTATATCTGC
CGTGCTGTCTAAAAATGGAGATTGTATCATCGCCACCATGGAAAATACCTCAGCTGTGTTTTTTTGGAGG
CGGGACACAGGACAGTGTATGGCAAGCTTGCAGGAAATCTCAGGTTCCATTGTTAAGTTAGTGAAATCCA
GTCACCACAATATGCTACTGTCTTTATCAACCAGTGGTGTTCTTTCCATTTGGGACATAGATATAATCAC
AGCTATGTCCAACATAGATAAGACTGGAAAACCCATCCAAAGTCTGTTGTTGCCTGCTAGAGGGGAAATC
ATTTACTCCCTGGATGGATCCGATTGTGTTCATAAGTGGAACTTCAGCAGTGGCTTCATCGAAGCAGTAT
TCAAGCATGAAGGAATAGTTGAACACTGTGTGTTAACATCCACCGGAGATATAATGGTGACATCAGATGA
CAAAAGCAGCCAGTATGTCTGGCACACCAGCAGTGGTGAAAACCTTTTTCGAATTAACGGGCAGAGAATA
TCTCAGCTGCTGATTACACACAATGACCAGTTTGTGGTCTCGCTCTGTGAGGAAAATGCCTCCAGGGTTT
GGAGGCTCGCCACAGGCCACAGGGTCTGCAACATTCTGACCACTTTGCAGAATGCCTTTATTACCTCCGC
AAATACCTTCGTGGTGGGAATGACTAAAAGCAAAGTGTTGGCAGTCAGTCTTTGGACAGGAAGTATCACC
AAGAAATTTTGCTGTGAAGATGGGACCACCATCGTGAATTTTAAATTAATCCCTGACTGTCCTGATATCA
TCGTGTTTATCACATCGGCCGAGACTGTGAACATCTGGAGTCTGACAGATGAAGTGATCTGTCGGCGCGT
GCAACTTCCAAACAACTTCTTGAAAAATCTGGAGGACTTTGAAATTTCTCCCAATGGAAAGCTAGGCATT
ATAGCCAGGGGAGATGAAAACATCAATGTGCTAGATTTATACAGTGGTAAATTGCGGGTGGTTCACGCCT
CTGGGATCATCTGGCGGCAGAGGTTGTCTCGGGATGGTCGCTACCTGGTATACATTTGTTTCCGAAATGG
GGAGGAGGAGGATGAAAATGGTGCAATATTCAGTTTAATTGTAATGAGACTGGCAGATGGCAAAAATATC
GGTGCTTGTTCCCTTTACAAAACACCAACTTTCCTTGCACTCTCCCAGAGGCACCTGAACATCATTGTGG
GCTTTGATGATGGGAGTATAGGGATCTACACGGTAGTAGACCGTGTAGATGCTGCACTGAAAATCAAAAT
TGCCACTTCAAATAGCAGACAAATTTTCAACAATGCAACACACACCTCCAGGCCAAAGTGTAACAGTTAT
TGTTTTAAAATATCTGTGGATTGCTTATGGAGAGAGTCCACTGAGGTCTTTGCAAGAGACAGCCCCATCA
CAGTTAGTGACTCTACTGAGTCCAATGAAGCAACACCCTCCAAGAAACACAACTCTTGTTATGAGCGGGT
ATGCTCGGCCCTAGAAGCCAGGGGCCACAGCTATGCCCCTGATAACTGA

Translation (1742 aa):
MWPAGAGTKLPCPRDSALRRAAFSGNLTALPSHLVPAGRSVRVFISANPEDTGAERQALRENVYPKLREF
CRENYGLEFQVIDLYWGVEEDEWDSPELQKTRMKLLENCLKTSAGPCFVGLLGEKYGNIRIPGEVEASEF
EMILDAAIEAKLETKLLEEWYCRDENSVPAAYYLRPKSEMLRSNRNAMQPSTNAENEKTWQEISDEIKKI
FKAAVKLLHEKGKMKHSQAKRYLFSAIEDEFDFALGKQTPAFLKKCVCYIRKIANIERFVKIPEMGKYMD
ITGTEPRIIRDPEAQEKLIKLRDEFIPTIVASSNLRVYTSVTHCDMKLGYSQEIENHYIEGLGKQFYEDM
IDIIQATIQQNFDTETDTLYDEILQHSSLCKTYASFYEYKCESLNIVHNYILPSKAGHINPLIIYGGPCT
GKTLLLAEVAKKAYGWLHEDTGPESDPVVIVRFLGTTDMSSDLRTLLLSVCEQLAVNYRCLVQSYPKKIH
DLCDLFINLLNESSLQRPLVIIFDALEQLSENDDARKLWWLPAHLPRFVRIVLSTLPNKHGILQKLRCLI
HEEDNYIELIPRDRKMCSQVLKHQLLRVKRKVTSGQQIYVNNALSKCTLPMFVNLTFREVRHWRSHKDVD
ESSLSVTVHESIEQLFWSLEKKCGQKLVSRALGYITMAKMGLSEMELEDVLALDNSVMSELKENTRPSNP
LRVPYLYIARLKEGLSGYLIERHVKNVTLLVWANRHLQLIAQKLYLQDDNDLREMHTILADYFLGVWSGG
RRKAFCLEDPYLNGCLDLENRSLLEEEKHFMEQASFDRQAPDQPWVFQCNPLEPDIFFVNHRKMSELLYH
LTRCGKTDDLLYGIIMNFSWLYTMIKIGQFDKVLSDIELAYNYSQEKELKFLANTLRSIKNKVTAFPGSL
SAELQQRLLPVVSSLPKLRHLLLECDKDGPKYCSIVPLHSSMDVTYSPERLPLSSSHLHVTEILPTCNPS
TVLTALENGSISTWDVETRQLLRQITTAQSVILGMKLTSDEKYLVVATTNNTLLIYDNVNSCLLSEVEIK
GTKHGSSATYINGFTLSANHALAWLEASKDVTVIDLLYGWPLYQFHCWYEVTCVQCSLDGLYAFCGQYLN
TTTIFHLGSGEKLCTVTSEFSGGFVKFLLILDTAQEMVMVDSEGSLSVWNTEDISSPQLTDDFDCRREDS
EVVSIELSEDQSAVLICKALSIELLDTGLWKVAEKFRAKHNERFISAVLSKNGDCIIATMENTSAVFFWR
RDTGQCMASLQEISGSIVKLVKSSHHNMLLSLSTSGVLSIWDIDIITAMSNIDKTGKPIQSLLLPARGEI
IYSLDGSDCVHKWNFSSGFIEAVFKHEGIVEHCVLTSTGDIMVTSDDKSSQYVWHTSSGENLFRINGQRI
SQLLITHNDQFVVSLCEENASRVWRLATGHRVCNILTTLQNAFITSANTFVVGMTKSKVLAVSLWTGSIT
KKFCCEDGTTIVNFKLIPDCPDIIVFITSAETVNIWSLTDEVICRRVQLPNNFLKNLEDFEISPNGKLGI
IARGDENINVLDLYSGKLRVVHASGIIWRQRLSRDGRYLVYICFRNGEEEDENGAIFSLIVMRLADGKNI
GACSLYKTPTFLALSQRHLNIIVGFDDGSIGIYTVVDRVDAALKIKIATSNSRQIFNNATHTSRPKCNSY
CFKISVDCLWRESTEVFARDSPITVSDSTESNEATPSKKHNSCYERVCSALEARGHSYAPDN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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