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Report for CCDS17758.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17758.1 Public Mus musculus 3 Psrc1 23 108 98 CCDS HistoryNCBI Gene:56742Re-query CCDS DB by CCDS ID:17758.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17758.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090561.9 ENSMUSP00000088049.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090561.9Link to Ensembl Protein Viewer:ENSMUSP00000088049.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000090561Re-query CCDS DB by Protein ID:ENSMUSP00000088049
Original member Current member EBI ENSMUST00000102629.7 ENSMUSP00000099689.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102629.7Link to Ensembl Protein Viewer:ENSMUSP00000099689.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102629Re-query CCDS DB by Protein ID:ENSMUSP00000099689
Original member Current member NCBI NM_001190161.1 NP_001177090.1 Accepted alive Link to Nucleotide Sequence:NM_001190161.1Link to Protein Sequence:NP_001177090.1Re-query CCDS DB by Nucleotide ID:NM_001190161Re-query CCDS DB by Protein ID:NP_001177090Link to BLAST:NP_001177090.1
Original member Current member NCBI NM_019976.3 NP_064360.1 Accepted alive Link to Nucleotide Sequence:NM_019976.3Link to Protein Sequence:NP_064360.1Re-query CCDS DB by Nucleotide ID:NM_019976Re-query CCDS DB by Protein ID:NP_064360Link to BLAST:NP_064360.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177090.1 329 Q9D0P7 329 100% 0 0
NP_064360.1 329 Q9D0P7 329 100% 0 0

Chromosomal Locations for CCDS 17758.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108384267 108384285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108384374 108384431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108384970 108385408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108386293 108386407 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108386500 108386736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108387278 108387395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108387599 108387602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGGAGGATCTGAAAGAGGATATCAAGTTCATTGTGGACGAGACCTTGGACTTCGGAGGGCTGTCTCCAT
CTGACAGTCATGAGGAAGAAGACATAACAGTATTAGTGAGTCCAGAGAAACCACTTCGACGGGGCCTCGC
CCATCGGAGTAACCCAAATGAAGTAGCTCCCGCCCTCCAGGGTGTGCGGTTTAGCTTGGGCCCGCTCAGC
CCAGAGAAGCTGGAAGAGATTCTTGATGAAGCCAACCGCCTGGCGGCTCAGCTGGAGGAGTGTGCCCTGA
AAGATCGGGAGAGGGCTGGTACAGGCCCTGGAAGGCCCAGCCCCAGAGGGAAACCCAGTCCTCGGCGGGA
GACCTTCGTCCTGAAGGATAGCCCTGTCCGAGATCTGCTGCCCACCGTGAGTTCTTGGAGCACCCCACCT
CCAAGCAGCCTAGCTGGGCTCCGGAGCAGTGATAAAAAGGGGTCAGCCAGGGCTGTCCGGGTGGCATCCG
GAAAGAAGCCCTCCAGCATAAAGAAGGAATCACCCACTTGCAATCTGTTCCCTGCATCCAAAAGCCCGGG
GCGCTCTCCTCTTGCACAACCAATTCTTCCACCTCGGCGGAAAACTGGGTTCGGTGCCCGGACAACAGCA
AGCCCACCAATTCCTGTCAGACCAGTTCCACAGTCCTCAGCTAGCAACTCCCAATGTTCATCCCGGCTCC
AGGGAGCAGCTGTCAAGTCTTCCAGTCGACTCCCTGTCCCTTCAGCCATCCCCAAGCCTGCCACCCGAGT
GCCACTCATTGGGCGGAGTCTACCACCTGGAAAAGGTGCCCTAGCTCCAGATTCTCTCTCAACTCAGAAA
GGGCATCCAAGCGCCATAGGGCACAGAGCCTCTGTTTCCCAGAAAACAAACCTTCCAACCACCAGTGCGG
CTCGAGGCAGGACCACCAGTGCCGCTCGAGGCAGGGCGCAGCCCCTCAGGAAAGCTGCAGTCCCTGGACC
GACTAGGTAA

Translation (329 aa):
MEDLKEDIKFIVDETLDFGGLSPSDSHEEEDITVLVSPEKPLRRGLAHRSNPNEVAPALQGVRFSLGPLS
PEKLEEILDEANRLAAQLEECALKDRERAGTGPGRPSPRGKPSPRRETFVLKDSPVRDLLPTVSSWSTPP
PSSLAGLRSSDKKGSARAVRVASGKKPSSIKKESPTCNLFPASKSPGRSPLAQPILPPRRKTGFGARTTA
SPPIPVRPVPQSSASNSQCSSRLQGAAVKSSSRLPVPSAIPKPATRVPLIGRSLPPGKGALAPDSLSTQK
GHPSAIGHRASVSQKTNLPTTSAARGRTTSAARGRAQPLRKAAVPGPTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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