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Report for CCDS51254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51254.1 Public Mus musculus 4 Dmrtb1 23 108 98 CCDS HistoryNCBI Gene:56296Re-query CCDS DB by CCDS ID:51254.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51254.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000069271.4 ENSMUSP00000064220.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069271.4Link to Ensembl Protein Viewer:ENSMUSP00000064220.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000069271Re-query CCDS DB by Protein ID:ENSMUSP00000064220
Original member NCBI NM_019872.2 NP_063925.1 Updated not alive Link to Nucleotide Sequence:NM_019872.2Link to Protein Sequence:NP_063925.1Re-query CCDS DB by Nucleotide ID:NM_019872Re-query CCDS DB by Protein ID:NP_063925
Current member NCBI NM_019872.3 NP_063925.1 Accepted alive Link to Nucleotide Sequence:NM_019872.3Link to Protein Sequence:NP_063925.1Re-query CCDS DB by Nucleotide ID:NM_019872Re-query CCDS DB by Protein ID:NP_063925Link to BLAST:NP_063925.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_063925.1 359 A2A9I7 359 100% 0 0

Chromosomal Locations for CCDS 51254.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 107677005 107677069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107679253 107679475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107680646 107680854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 107683580 107684162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1080 nt):
ATGCTTCGCGCCCCCAAGTGCTCTAGGTGCCGGAACCATGGCTATCTGGTACCAGTCAAGGGCCATACGG
GCAAATGCCGCTGGAAGCAGTGCATCTGTGACAAGTGCTACCTGATCACCGAGCGCCAGAAGATCATGGC
TGCCCAGAAGGTTCTCAGAACCCAAGCTGCCGAGGAGCAGGTGGCGACCGTGGGCACGCAGGGTCCCCAG
CTGCCTCCTAGGGCTCCAGCAGCGGCGGCCACCGCCTTGAGCTCCAGCATTTGCCCACTGCCTAGGGCGG
TTCCGGGAGGCGTTGGGCCAGGCCCCACGGCCACTTGCTTCCTCGAGAGGCCCCCGCAGGCCCCGAGCCC
AGGCCCGAGCACCTTCCAGCTGGGCCCAAGTGGCCGCCCGGGCCCCAGCACCTTCCAGCCTGGACCAGGG
GCCCCCGGGGGACTGCGCGACCGTTCCTCCGCGTGGCTGCCCCAGCTCATGCCACAGGCGCCCAGGCCGG
AGCTTTGCTACCCGGATCAGCACCTGCCAGTGCGGCCCGTGCCAGTGCCAGGGCCAGTGCGGCCCGTGCC
CCGACTGCCGTTCGCCGACTACGGGCATCCTCTGAGATTCAAGTCTGATCATGTGGTAGGAGCTGGGAAT
CCTGAGAGAGAGCCGTTCAAGCAGTGCCCTGCCTGCGTCCCTGTTTCACCCTACCAGTCCTTTCCACTTT
CGGAAGGCCAGGATTCATCCTCTGCTCTGGGGGTCCCTCAACAAAGAGGCTTCCGGCATGTCTCCTGCAG
CCCCTACCATAGAAGCGGCTTGGTGTCAGAGCCAGCCAGAGACCTGCAGCCAACCTACTGCTCACCGCCG
CCGCCACCACCGCCGCCACCTCCGCCACCACTACCAGCACCCCCACCCCAGCCACAGCAGCCCCACTTCC
TCCCACCAGGCTACCTCTCTGCTCTCCACTTCCTGCCACCGCCGCCACCGCCACCATCTCCACCATCTTT
CTCGCTGACCTACGATACAGACAAGGAGAATACCAATGACCAGGATGCAGAAGCACCCACCGAGCCCAGC
CAGGACTCTCCCCAGGAGCAGTCCAACTAA

Translation (359 aa):
MLRAPKCSRCRNHGYLVPVKGHTGKCRWKQCICDKCYLITERQKIMAAQKVLRTQAAEEQVATVGTQGPQ
LPPRAPAAAATALSSSICPLPRAVPGGVGPGPTATCFLERPPQAPSPGPSTFQLGPSGRPGPSTFQPGPG
APGGLRDRSSAWLPQLMPQAPRPELCYPDQHLPVRPVPVPGPVRPVPRLPFADYGHPLRFKSDHVVGAGN
PEREPFKQCPACVPVSPYQSFPLSEGQDSSSALGVPQQRGFRHVSCSPYHRSGLVSEPARDLQPTYCSPP
PPPPPPPPPPLPAPPPQPQQPHFLPPGYLSALHFLPPPPPPPSPPSFSLTYDTDKENTNDQDAEAPTEPS
QDSPQEQSN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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