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Report for CCDS39039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39039.1 Public Mus musculus 5 Paxip1 23 108 98 CCDS HistoryNCBI Gene:55982Re-query CCDS DB by CCDS ID:39039.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39039.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002291.11 ENSMUSP00000002291.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002291.11Link to Ensembl Protein Viewer:ENSMUSP00000002291.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000002291Re-query CCDS DB by Protein ID:ENSMUSP00000002291
Original member NCBI NM_018878.3 NP_061366.2 Updated not alive Link to Nucleotide Sequence:NM_018878.3Link to Protein Sequence:NP_061366.2Re-query CCDS DB by Nucleotide ID:NM_018878Re-query CCDS DB by Protein ID:NP_061366
Current member NCBI NM_018878.4 NP_061366.2 Accepted alive Link to Nucleotide Sequence:NM_018878.4Link to Protein Sequence:NP_061366.2Re-query CCDS DB by Nucleotide ID:NM_018878Re-query CCDS DB by Protein ID:NP_061366Link to BLAST:NP_061366.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061366.2 1056 Q6NZQ4 1056 100% 0 0

Chromosomal Locations for CCDS 39039.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 27742488 27742503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27744115 27744175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27744257 27744332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27744421 27744555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27748814 27748914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27750963 27751131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27752744 27752846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27754485 27754555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27756953 27756996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27758431 27758615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27759370 27759491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27759973 27760110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27761577 27761672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27765138 27765232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27765591 27766290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27772004 27772624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27775566 27775679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27781422 27781485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27783730 27783773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27788643 27788777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 27791199 27791279 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3171 nt):
ATGTCGGAGCCGGCGCCCGAAGTTCCAGAGGAGCTATTCCGCGAGGTCAAGTACTACGCGGTGGGCGACA
TCGACCCGCAGGTTATTCAGCTCCTTAAAGCTGGGAAAGCCAAGGAAGTCTCCTACAATGCCCTGGCCTC
ACACATCATTTCAGAGGATGGGGACAACCCAGAGGTGGGAGAAGCCCGTGAGGTCTTTGACTTGCCCGTT
GTAAAGCCTTCCTGGGTGACTCTGTCCGTGCAATGTGGCGCTCTCCTGCCAGTCAATGGTTTCTCTCCAG
AGTCCTGTCAGATTTTTTTTGGACTCACTGCCTGCCTTTCTCAGGTGTCATCTGAAGACAGAAGTGCCCT
GTGGGCCTTGGTTACGTTCCACGGGGGCAGTTGCCAACTAAACCTTAACAAGAAGTGCACACACTTGATT
GTCCCAGAGCCAAAGGGGGAGAAATACGAGCGTGCTGTCAAAAGAACAAGTATTAAGATTGTCACCCCGG
ACTGGGTCCTGGACTGTGTGTCTGAGAAGAGGAGGAAGGATGAAGCGTTTTACCATCCACGCCTGATCAT
CTATGAGGAGGAGGAAGAGGAGGAGGAAGAGGGAGACAACGAGGAGCAGGACTCCCAGAACGAGGGCAGC
ACTGAGAAGTCCAGTGTCGCCAGCTCTGCAGTGGCCTCCCCTGCTGAGCAGCCGTGCTCTCCCAAGCCCA
GGGCTGAGGTGTCCAAAGGAGAGTTGATGTTTGATGACTCTTCTGACTCATCCCCTGAAAAGCAGGAGCG
CAGCTTGAACTGGGCCCCTGCTGAAGCCCCACCACTCAACACAGCCCAGCGCAGGCTGCCTCAGGGAAAA
GGGCCAGGACTCATTAACCTGTGTGCCAATGTCCCACCTGTTCCAGGGGACATTCTGCCTCCTGACATGC
GGGGTAACTTGATGGCCCCTGGACAAAACCTCCAGAATTCTGAGCGGTCAGAAATACTAGGGACCTGGAG
CCCAGCTGTCCGGACGTTGCGAAACATTACAAACAATGCTGATATCCAGCAGATCAACCGGCCATCCAAT
GTTGCACATATCTTACAATCCCTTTCAGCACCCACAAAAAGCCTAGAGCAGCAGGTGGCCCGTGGCCAGC
AGGGACACCCCAATGCCAGTGCTGTGCTGTTTGGCCAGGCTAAAGGTGCTCCCGAGACACACGTGTTGCA
GCAGCACCACCCTCCCCAGCAGCCTCAGCAGCAGCACCCAGCCCTGCACCTCCAGCCCCAGATCATGCAG
CTCCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCCCCAGCCCTACCCCCAGCCTCCATCAC
ATCAGTTCCCGCAGCAAGTCCATCAGCATCAGTTCTCTCAGCAGCAGCTCCAGTTTCCACAGCAACCATT
ACACCCTCAGCAGCAGTTGCATCGTCCTCAACAGCAGCTGCAGCCATTTCAGCAGCAGCATGCCCTGCAG
CAGCAGCTTCATCAGTTGCAGCAGCAGCAGCTCCAGCACCACCAGTTAGCACAGCTCCAGCAACAGCAGC
AACAGCAGCACAACCTTCTCCAGCAGCAGCAACAACAGCAGCAGCTCCAACGCTTGCAGCAGCAGCAGCA
GATGCAGAATCAAGCAGCACACTTGAGCCAAGCGTCCCAGGCACTACAGCACCAGGTTCTACCCCAGCAG
CCCCTGCAGCTGTCCCTGCAGCCCCCACCTCAGCAACAGCAGCAGCAGCAGCTTTTTGGACATGACCCAG
CAGTGGAGATTCCAGAAGAAAGCTTCTTGCTAGGATGTGTGTTTGCAATTGCGGACTATCCCGAGCAGAT
GTCGGATAAGCAGCTGCTGGCCACCTGGAAAAGGATAATCCAGGCACATGGTGGCACTGTGGACCCCACT
TTCACAAGCCGATGTACACACCTCCTCTGCGCAAGTCAAGTCAGTAGTATGTACACACAGGCACTACGGG
AGAGAAAGCGGTGTGTCACTGCACACTGGCTCAACACAGTGCTGAAGAAGAAGAAGCTGATGCCCCCTCA
TCGAGCCCTGCATTTCCCGGTGGCGTTCCCACCTGGGGGCAAACCCTGTTCACAGCATATTATCTCTGTG
ACTGGATTTGTTGACAATGACAGAGATGACCTGAAGTTAATGGCATACCTGGCAGGTGCCAAGTACACAG
GGTACCTGTGCCGTAGCAACACAGTCCTCATCTGTAAAGAACCAAGCGGCTTGAAGTATGAAAAGGCCAA
AGAGTGGAGGATCCCATGTGTGAATGCACAGTGGCTGGGGGACATTCTGCTGGGGAACTTTGAGGCCCTG
CGGCAAGTGCAGTACAGCCGGTACACCGCCTTCAACATGCCGGACCCCTTCGTTCCCACTCCACACTTGG
TCTTGGGTCTTCTAGATGCATGGAGGACCCCAGTGAAGGTGACTGCAGAGCTGTTGATGGGTGTAAGATT
ACCTCCTAAGCTGAAACCAAATGAGGTCGCTAACATCCAGCCTTCTTCTAAAAGAGCCAGAATTGAAGAC
TTGCCACCTCCCACTAAGAAGCTGACTCCAGAGCTGACGCCTTTAGTGCTCTTCACTGGGTTTGAGCCTG
TTCAAGTTCAGCAGTACATTAAGAAGCTGTACATTCTTGGTGGGGAAGTTGCTGAGTGCACGAAGAAGTG
TACCCACCTCATTGCCAGCAAGGTGACACGCACAGTGAAATTCTTGACGGCCATCTCTGTAGTAAAGCAC
ATTGTGACTCCGGACTGGCTGGAGGAGTGCTTCAAGCGCCAGACATTTATCGATGAGCAGAACTACATCC
TTCGAGATGCTGAGGCAGAAGTGCTCTTCTCTTTCAGTCTGGAAGAGTCCTTAAAGCGAGCCCATGTCTC
TCCCCTCTTTAAGACAAAGTATTTCTATATCACCCCTGGCATCTGCCCAAGCCTTGCAACTATGAAGGCA
ATTGTAGAGTGTGCAGGGGGAAAGGTGCTAGCCAAGCAGCCGTCCTTCCGGAAGCTCATGGAGCACAAGC
AGAATAAGAGTCTTTCAGAGATCATTTTAATATCCTGTGAGAACGACCTGCACTTATGTCGCGAGTACTT
TGCCAGGGGAATAGATGTTCACAATGCGGAGTTTGTCCTGACTGGAGTACTCACACAGACACTGGACTAT
GAATCATATAAATTTAACTGA

Translation (1056 aa):
MSEPAPEVPEELFREVKYYAVGDIDPQVIQLLKAGKAKEVSYNALASHIISEDGDNPEVGEAREVFDLPV
VKPSWVTLSVQCGALLPVNGFSPESCQIFFGLTACLSQVSSEDRSALWALVTFHGGSCQLNLNKKCTHLI
VPEPKGEKYERAVKRTSIKIVTPDWVLDCVSEKRRKDEAFYHPRLIIYEEEEEEEEEGDNEEQDSQNEGS
TEKSSVASSAVASPAEQPCSPKPRAEVSKGELMFDDSSDSSPEKQERSLNWAPAEAPPLNTAQRRLPQGK
GPGLINLCANVPPVPGDILPPDMRGNLMAPGQNLQNSERSEILGTWSPAVRTLRNITNNADIQQINRPSN
VAHILQSLSAPTKSLEQQVARGQQGHPNASAVLFGQAKGAPETHVLQQHHPPQQPQQQHPALHLQPQIMQ
LQQQQQQQQQQQQQPQPYPQPPSHQFPQQVHQHQFSQQQLQFPQQPLHPQQQLHRPQQQLQPFQQQHALQ
QQLHQLQQQQLQHHQLAQLQQQQQQQHNLLQQQQQQQQLQRLQQQQQMQNQAAHLSQASQALQHQVLPQQ
PLQLSLQPPPQQQQQQQLFGHDPAVEIPEESFLLGCVFAIADYPEQMSDKQLLATWKRIIQAHGGTVDPT
FTSRCTHLLCASQVSSMYTQALRERKRCVTAHWLNTVLKKKKLMPPHRALHFPVAFPPGGKPCSQHIISV
TGFVDNDRDDLKLMAYLAGAKYTGYLCRSNTVLICKEPSGLKYEKAKEWRIPCVNAQWLGDILLGNFEAL
RQVQYSRYTAFNMPDPFVPTPHLVLGLLDAWRTPVKVTAELLMGVRLPPKLKPNEVANIQPSSKRARIED
LPPPTKKLTPELTPLVLFTGFEPVQVQQYIKKLYILGGEVAECTKKCTHLIASKVTRTVKFLTAISVVKH
IVTPDWLEECFKRQTFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKTKYFYITPGICPSLATMKA
IVECAGGKVLAKQPSFRKLMEHKQNKSLSEIILISCENDLHLCREYFARGIDVHNAEFVLTGVLTQTLDY
ESYKFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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