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Report for CCDS10588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10588.1 Public Homo sapiens 16 THUMPD1 24 110 108 CCDS HistoryNCBI Gene:55623Re-query CCDS DB by CCDS ID:10588.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10588.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381337.6 ENSP00000370741.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381337.6Link to Ensembl Protein Viewer:ENSP00000370741.2Re-query CCDS DB by Nucleotide ID:ENST00000381337Re-query CCDS DB by Protein ID:ENSP00000370741
Original member Current member EBI ENST00000396083.7 ENSP00000379392.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396083.7Link to Ensembl Protein Viewer:ENSP00000379392.2Re-query CCDS DB by Nucleotide ID:ENST00000396083Re-query CCDS DB by Protein ID:ENSP00000379392
Original member Current member EBI ENST00000636554.1 ENSP00000490841.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000636554.1Link to Ensembl Protein Viewer:ENSP00000490841.1Re-query CCDS DB by Nucleotide ID:ENST00000636554Re-query CCDS DB by Protein ID:ENSP00000490841
Original member Current member NCBI NM_001304550.2 NP_001291479.1 Accepted alive Link to Nucleotide Sequence:NM_001304550.2Link to Protein Sequence:NP_001291479.1Re-query CCDS DB by Nucleotide ID:NM_001304550Re-query CCDS DB by Protein ID:NP_001291479Link to BLAST:NP_001291479.1
Original member Current member NCBI NM_017736.5 NP_060206.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017736.5Link to Protein Sequence:NP_060206.2Re-query CCDS DB by Nucleotide ID:NM_017736Re-query CCDS DB by Protein ID:NP_060206Link to BLAST:NP_060206.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001291479.1 353 Q9NXG2 353 100% 0 0
NP_060206.2 353 Q9NXG2 353 100% 0 0

Chromosomal Locations for CCDS 10588.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 20736880 20737286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20737708 20737956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20738897 20739071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 20741509 20741739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1062 nt):
ATGGCGGCCCCTGCCCAGCAGACTACTCAGCCTGGCGGCGGGAAGCGCAAAGGCAAGGCTCAGTATGTGC
TGGCCAAGCGCGCTCGGCGCTGCGACGCTGGCGGGCCCCGTCAGCTAGAGCCCGGGCTACAGGGCATCCT
CATCACCTGCAATATGAACGAGCGCAAGTGCGTGGAGGAGGCCTACAGCCTCCTCAACGAATACGGCGAC
GACATGTATGGGCCAGAAAAGTTTACAGACAAGGATCAGCAGCCCTCTGGAAGTGAGGGAGAGGATGATG
ATGCGGAGGCTGCCTTGAAGAAAGAAGTTGGTGACATTAAGGCATCTACAGAGATGAGGTTAAGAAGATT
CCAGTCAGTGGAAAGTGGAGCAAATAACGTTGTCTTCATCAGGACACTTGGGATAGAGCCTGAGAAATTG
GTGCATCATATTCTCCAGGATATGTACAAAACCAAGAAAAAGAAGACTCGAGTTATTTTGCGAATGTTAC
CCATCTCAGGCACATGCAAGGCTTTTTTAGAAGATATGAAAAAATATGCAGAAACATTTTTGGAACCCTG
GTTTAAAGCTCCAAACAAAGGGACATTTCAGATTGTGTACAAATCTCGAAATAACAGTCATGTGAATAGA
GAAGAAGTTATCAGAGAATTGGCAGGAATAGTGTGCACCCTCAATTCAGAAAATAAAGTGGATCTCACCA
ATCCACAGTACACAGTGGTAGTAGAAATCATCAAAGCTGTCTGTTGCCTGAGTGTTGTGAAAGATTACAT
GTTGTTTAGAAAATACAATCTCCAGGAGGTGGTGAAGAGCCCTAAGGATCCGTCACAGCTTAACTCAAAG
CAGGGAAATGGGAAAGAAGCTAAACTGGAATCTGCGGACAAATCAGACCAAAACAACACAGCAGAAGGAA
AAAATAACCAGCAGGTACCAGAGAATACTGAGGAGCTGGGGCAGACAAAACCAACGTCTAATCCACAGGT
GGTAAATGAGGGAGGAGCCAAACCTGAACTTGCAAGTCAAGCCACAGAAGGATCCAAGTCAAATGAAAAT
GACTTCTCATAG

Translation (353 aa):
MAAPAQQTTQPGGGKRKGKAQYVLAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEEAYSLLNEYGD
DMYGPEKFTDKDQQPSGSEGEDDDAEAALKKEVGDIKASTEMRLRRFQSVESGANNVVFIRTLGIEPEKL
VHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAETFLEPWFKAPNKGTFQIVYKSRNNSHVNR
EEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSK
QGNGKEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSKSNEN
DFS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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