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Report for CCDS41808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41808.1 Public Homo sapiens 12 SLC35E3 24 110 108 CCDS HistoryNCBI Gene:55508Re-query CCDS DB by CCDS ID:41808.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41808.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398004.4 ENSP00000381089.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398004.4Link to Ensembl Protein Viewer:ENSP00000381089.2Re-query CCDS DB by Nucleotide ID:ENST00000398004Re-query CCDS DB by Protein ID:ENSP00000381089
Original member Current member NCBI NM_018656.5 NP_061126.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018656.5Link to Protein Sequence:NP_061126.2Re-query CCDS DB by Nucleotide ID:NM_018656Re-query CCDS DB by Protein ID:NP_061126Link to BLAST:NP_061126.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061126.2 313 Q7Z769 313 100% 0 0

Chromosomal Locations for CCDS 41808.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 68746378 68746779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68747930 68748040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68752032 68752190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68759157 68759239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68764704 68764890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGCATTGCTGGTGGACCGAGTGCGGGGCCACTGGCGAATCGCCGCCGGGCTCCTGTTCAACCTGCTGG
TGTCCATCTGCATTGTGTTCCTCAACAAATGGATTTATGTGTACCACGGCTTCCCCAACATGAGCCTGAC
CCTGGTGCACTTCGTGGTCACCTGGCTGGGCTTGTATATCTGCCAGAAGCTGGACATCTTTGCCCCCAAA
AGTCTGCCGCCCTCCAGGCTCCTCCTCCTGGCCCTCAGCTTCTGTGGCTTTGTGGTCTTCACTAACCTTT
CTCTGCAGAACAACACCATAGGCACCTATCAGCTGGCCAAGGCCATGACCACGCCGGTGATCATAGCCAT
CCAGACCTTCTGCTACCAGAAAACCTTCTCCACCAGAATCCAGCTCACGCTGATTCCTATAACTTTAGGT
GTAATCCTAAATTCTTATTACGATGTGAAGTTTAATTTCCTTGGAATGGTGTTTGCTGCTCTTGGTGTTT
TAGTTACATCCCTTTATCAAGTGTGGGTAGGAGCCAAACAGCATGAATTACAAGTGAACTCAATGCAGCT
GCTGTACTACCAGGCTCCGATGTCATCTGCCATGTTGCTGGTTGCTGTGCCCTTCTTTGAGCCAGTGTTT
GGAGAAGGAGGAATATTTGGTCCCTGGTCAGTTTCTGCTTTGCTTATGGTGCTGCTATCTGGAGTAATAG
CTTTCATGGTGAACTTATCAATTTATTGGATCATTGGGAACACTTCACCTGTCACCTATAACATGTTCGG
ACACTTCAAGTTCTGCATTACTTTATTCGGAGGATATGTTTTATTTAAGGATCCACTGTCCATTAATCAG
GCCCTTGGCATTTTATGTACATTATTTGGCATTCTCGCCTATACCCACTTTAAGCTCAGTGAACAGGAAG
GAAGTAGGAGTAAACTGGCACAACGTCCTTAA

Translation (313 aa):
MALLVDRVRGHWRIAAGLLFNLLVSICIVFLNKWIYVYHGFPNMSLTLVHFVVTWLGLYICQKLDIFAPK
SLPPSRLLLLALSFCGFVVFTNLSLQNNTIGTYQLAKAMTTPVIIAIQTFCYQKTFSTRIQLTLIPITLG
VILNSYYDVKFNFLGMVFAALGVLVTSLYQVWVGAKQHELQVNSMQLLYYQAPMSSAMLLVAVPFFEPVF
GEGGIFGPWSVSALLMVLLSGVIAFMVNLSIYWIIGNTSPVTYNMFGHFKFCITLFGGYVLFKDPLSINQ
ALGILCTLFGILAYTHFKLSEQEGSRSKLAQRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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