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Report for CCDS5538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5538.1 Public Homo sapiens 7 TYW1 24 110 108 CCDS HistoryNCBI Gene:55253Re-query CCDS DB by CCDS ID:5538.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5538.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359626.10 ENSP00000352645.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359626.10Link to Ensembl Protein Viewer:ENSP00000352645.5Re-query CCDS DB by Nucleotide ID:ENST00000359626Re-query CCDS DB by Protein ID:ENSP00000352645
Original member Current member NCBI NM_018264.4 NP_060734.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018264.4Link to Protein Sequence:NP_060734.2Re-query CCDS DB by Nucleotide ID:NM_018264Re-query CCDS DB by Protein ID:NP_060734Link to BLAST:NP_060734.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060734.2 732 Q9NV66-1 732 100% 0 0

Chromosomal Locations for CCDS 5538.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 66996979 66996982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66998065 66998195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 66998817 66998954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67009583 67009684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67014367 67014561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67017853 67018143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67024900 67025022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67049949 67050066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67055835 67055887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67067285 67067403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67083430 67083539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67098541 67098718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67117483 67117618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67183126 67183236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67195170 67195337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 67238308 67238529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2199 nt):
ATGGATCCTTCTGCGGATACATGGGACCTCTTCTCACCTTTAATATCATTATGGATAAACAGGTTTTACA
TTTATTTGGGCTTTGCTGTTAGCATTAGCCTTTGGATTTGTGTCCAGATTGTCATCAAGACGCAGGGCAA
GAACTTACAGGAAAAATCTGTTCCAAAAGCAGCTCAGGATTTGATGACAAATGGTTATGTCTCCCTTCAA
GAGAAAGACATCTTTGTGTCTGGAGTGAAGATTTTTTATGGTTCTCAGACTGGAACAGCGAAGGGATTCG
CAACAGTTCTTGCTGAAGCAGTTACATCCCTGGATCTGCCTGTGGCCATTATTAATCTAAAAGAATATGA
TCCAGATGATCATCTGATAGAAGAGGTGACTAGTAAAAATGTCTGTGTCTTCCTGGTTGCGACATACACT
GACGGCCTACCAACTGAAAGTGCAGAGTGGTTCTGCAAATGGTTAGAGGAAGCATCCATTGATTTTCGAT
TTGGCAAAACTTACCTGAAGGGTATGAGATATGCGGTATTTGGCCTGGGAAATTCTGCCTATGCTAGCCA
CTTCAACAAGGTTGGCAAAAATGTTGACAAGTGGCTCTGGATGCTTGGCGCGCATCGTGTGATGAGTCGA
GGGGAGGGCGACTGCGACGTGGTTAAAAGCAAGCACGGCAGCATTGAGGCCGACTTCAGAGCATGGAAGA
CCAAGTTCATCTCCCAGCTGCAGGCACTTCAGAAAGGGGAGAGAAAGAAGTCCTGTGGCGGCCACTGCAA
GAAAGGCAAATGTGAATCTCACCAACATGGCTCAGAGGAGAGGGAGGAAGGATCTCATGAGCAGGATGAA
TTGCATCATAGAGACACCGAGGAGGAAGAACCCTTTGAGAGCTCCAGTGAAGAAGAGTTTGGTGGTGAGG
ACCATCAGAGCCTAAATTCCATTGTTGATGTTGAAGATTTGGGCAAAATTATGGATCATGTGAAGAAAGA
AAAGAGAGAAAAGGAACAGCAGGAAGAGAAGTCTGGTTTGTTCAGGAACATGGGGAGGAATGAAGATGGT
GAAAGAAGAGCTATGATAACTCCTGCTCTCCGAGAAGCCCTTACTAAACAAGGTTATCAGTTGATTGGGA
GCCACTCGGGGGTGAAGCTTTGCAGGTGGACAAAGTCCATGCTCCGAGGGAGAGGAGGTTGTTACAAACA
CACATTCTATGGAATTGAGAGCCATCGCTGCATGGAAACCACCCCGAGCTTGGCGTGTGCTAATAAATGT
GTCTTCTGTTGGCGGCACCACACCAACCCCGTGGGCACTGAGTGGCGGTGGAAGATGGACCAGCCTGAAA
TGATCTTGAAGGAAGCCATTGAAAACCATCAGAACATGATTAAGCAGTTTAAAGGAGTACCGGGCGTCAA
AGCAGAACGCTTTGAAGAAGGAATGACGGTAAAGCACTGTGCATTGTCCCTCGTGGGAGAACCAATAATG
TACCCAGAGATCAACAGGTTTTTGAAGCTACTCCACCAGTGTAAAATTTCCAGCTTCCTGGTCACAAACG
CACAATTTCCTGCGGAAATCAGGAACCTCGAGCCGGTTACTCAGCTGTATGTCAGTGTGGATGCCAGTAC
CAAAGACAGCCTGAAGAAAATCGACCGCCCACTCTTCAAGGATTTCTGGCAGAGATTCCTTGACAGTTTA
AAAGCCTTGGCAGTCAAGCAACAACGAACTGTCTACAGACTGACGCTCGTGAAAGCATGGAACGTGGACG
AGCTCCAGGCCTACGCGCAGCTCGTGTCCCTGGGGAATCCTGACTTCATCGAAGTGAAGGGCGTTACCTA
CTGCGGAGAAAGTTCAGCAAGCAGTCTTACCATGGCCCACGTGCCCTGGCATGAGGAAGTGGTACAGTTT
GTCCACGAGTTGGTGGATCTGATCCCCGAATATGAAATTGCATGTGAACACGAACACTCTAATTGCCTCC
TGATAGCACACAGAAAGTTTAAAATTGGTGGTGAATGGTGGACATGGATCGATTATAACCGCTTCCAGGA
GCTCATCCAGGAATATGAAGATAGTGGTGGATCAAAAACGTTCAGCGCAAAGGATTATATGGCCAGAACT
CCTCACTGGGCATTATTTGGTGCCAGTGAAAGAGGCTTTGATCCCAAGGACACAAGACATCAGAGAAAGA
ACAAATCAAAGGCTATTTCTGGATGTTGA

Translation (732 aa):
MDPSADTWDLFSPLISLWINRFYIYLGFAVSISLWICVQIVIKTQGKNLQEKSVPKAAQDLMTNGYVSLQ
EKDIFVSGVKIFYGSQTGTAKGFATVLAEAVTSLDLPVAIINLKEYDPDDHLIEEVTSKNVCVFLVATYT
DGLPTESAEWFCKWLEEASIDFRFGKTYLKGMRYAVFGLGNSAYASHFNKVGKNVDKWLWMLGAHRVMSR
GEGDCDVVKSKHGSIEADFRAWKTKFISQLQALQKGERKKSCGGHCKKGKCESHQHGSEEREEGSHEQDE
LHHRDTEEEEPFESSSEEEFGGEDHQSLNSIVDVEDLGKIMDHVKKEKREKEQQEEKSGLFRNMGRNEDG
ERRAMITPALREALTKQGYQLIGSHSGVKLCRWTKSMLRGRGGCYKHTFYGIESHRCMETTPSLACANKC
VFCWRHHTNPVGTEWRWKMDQPEMILKEAIENHQNMIKQFKGVPGVKAERFEEGMTVKHCALSLVGEPIM
YPEINRFLKLLHQCKISSFLVTNAQFPAEIRNLEPVTQLYVSVDASTKDSLKKIDRPLFKDFWQRFLDSL
KALAVKQQRTVYRLTLVKAWNVDELQAYAQLVSLGNPDFIEVKGVTYCGESSASSLTMAHVPWHEEVVQF
VHELVDLIPEYEIACEHEHSNCLLIAHRKFKIGGEWWTWIDYNRFQELIQEYEDSGGSKTFSAKDYMART
PHWALFGASERGFDPKDTRHQRKNKSKAISGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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