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Report for CCDS43488.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43488.1 Public Homo sapiens 6 SOBP 24 110 108 CCDS HistoryNCBI Gene:55084Re-query CCDS DB by CCDS ID:43488.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43488.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000317357.10 ENSP00000318900.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000317357.10Link to Ensembl Protein Viewer:ENSP00000318900.5Re-query CCDS DB by Nucleotide ID:ENST00000317357Re-query CCDS DB by Protein ID:ENSP00000318900
Original member Current member NCBI NM_018013.4 NP_060483.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018013.4Link to Protein Sequence:NP_060483.3Re-query CCDS DB by Nucleotide ID:NM_018013Re-query CCDS DB by Protein ID:NP_060483Link to BLAST:NP_060483.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060483.3 873 A7XYQ1 873 100% 0 0

Chromosomal Locations for CCDS 43488.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 107490617 107490712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107503657 107503795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107506242 107506427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107533459 107533610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107587080 107587175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 107633514 107635466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2622 nt):
ATGGCAGAAATGGAGAAAGAAGGGAGACCTCCCGAAAATAAACGGAGCAGGAAGCCGGCTCACCCAGTGA
AAAGGGAGATCAATGAGGAGATGAAGAACTTTGCAGAAAACACCATGAATGAACTCCTTGGCTGGTATGG
CTATGATAAGGTTGAATTAAAAGATGGTGAGGATATTGAATTCAGGAGCTACCCTACAGATGGGGAGAGC
CGGCAGCACATTTCTGTTCTCAAAGAAAATTCTTTGCCAAAACCAAAATTACCCGAGGACAGTGTTATTT
CACCATACAATATAAGCACAGGCTATTCAGGGCTTGCCACTGGAAATGGACTCAGTGACTCACCTGCAGG
GTCAAAGGATCATGGCAGTGTGCCCATTATTGTACCTTTAATTCCACCACCTTTCATAAAGCCACCAGCA
GAAGATGATGTGTCAAATGTACAAATAATGTGTGCCTGGTGCCAGAAAGTGGGAATCAAGCGCTATTCCC
TGAGTATGGGAAGTGAGGTGAAAAGCTTCTGCAGCGAGAAGTGCTTTGCGGCCTGCCGACGAGCCTACTT
CAAGAGAAATAAGGCTAGAGATGAAGATGGACATGCTGAAAATTTTCCCCAGCAGCACTATGCTAAGGAA
ACTCCAAGGCTTGCCTTCAAGAATAACTGCGAACTACTTGTATGTGACTGGTGTAAGCACATAAGACACA
CAAAAGAATACCTGGATTTTGGGGACGGGGAAAGAAGGCTTCAGTTCTGCAGTGCAAAATGTCTCAATCA
ATACAAAATGGACATTTTCTACAAAGAGACCCAGGCCAATCTTCCAGCTGGGCTGTGCAGCACATTACAC
CCTCCCATGGAAAATAAAGCAGAAGGCACCGGGGTGCAGCTGCTCACTCCAGACTCTTGGAATATCCCGC
TAACAGATGCTCGGAGGAAGGCCCCCTCCCCGGTGGCTACAGCTGGCCAAAGCCAGGGCCCTGGCCCGTC
GGCGTCCACCACCGTCTCTCCATCTGACACTGCCAACTGCTCTGTCACTAAAATCCCCACGCCAGTGCCC
AAGTCCATCCCCATCAGCGAGACTCCAAATATCCCTCCTGTCTCCGTCCAGCCACCTGCTAGCATCGGGC
CTCCCCTTGGCGTCCCGCCTCGGAGCCCTCCCATGGTGATGACCAACCGCGGCCCGGTGCCGCTGCCCAT
CTTCATGGAGCAGCAGATCATGCAGCAGATCCGCCCGCCCTTCATCCGCGGGCCTCCGCACCATGCCTCC
AACCCCAACAGCCCCCTGTCCAACCCCATGCTTCCCGGCATCGGGCCCCCGCCCGGTGGCCCCAGAAACC
TGGGCCCCACTTCCAGCCCCATGCACCGGCCCATGCTATCGCCCCACATCCACCCCCCGAGCACCCCCAC
CATGCCCGGGAACCCCCCAGGCCTGCTGCCCCCGCCGCCTCCGGGCGCCCCGCTGCCGAGTCTTCCCTTC
CCGCCAGTGAGCATGATGCCAAATGGCCCGATGCCGGTGCCCCAGATGATGAATTTCGGGCTGCCGTCGC
TTGCCCCGCTGGTGCCGCCCCCGACCCTGCTCGTGCCGTACCCCGTGATCGTGCCCCTACCGGTGCCCAT
CCCCATCCCCATCCCTATCCCTCACGTCAGCGACTCCAAGCCCCCCAACGGGTTCTCCAGCAACGGGGAG
AACTTCATTCCGAACGCCCCTGGCGACTCCGCGGCGGCGGGCGGCAAGCCAAGCGGACACTCCCTGTCCC
CCCGGGACTCCAAGCAGGGCTCGTCCAAGTCCGCGGACTCGCCCCCCGGCTGCTCGGGCCAGGCCCTGAG
CCTGGCGCCCACGCCCGCCGAGCATGGCCGGAGCGAGGTGGTGGACCTGACGCGGCGCGCCGGCAGCCCC
CCGGGCCCCCCGGGCGCGGGCGGCCAGCTCGGCTTCCCAGGCGTGCTGCAGGGCCCGCAGGACGGCGTCA
TCGACCTGACCGTGGGCCACCGAGCCCGGCTGCACAACGTGATCCACCGCGCGCTGCACGCGCACGTCAA
GGCGGAGCGCGAGCCGAGCGCCGCGGAGCGCAGGACCTGCGGCGGCTGCAGGGACGGCCACTGCAGCCCG
CCCGCCGCCGGCGACCCAGGCCCGGGCGCCCCGGCGGGCCCCGAGGCGGCCGCGGCCTGCAACGTCATCG
TGAACGGCACGCGCGGCGCCGCCGCCGAGGGCGCTAAGAGCGCGGAGCCGCCTCCCGAGCAGCCGCCGCC
GCCGCCGCCGCCCGCGCCCCCCAAGAAGCTGCTGTCGCCTGAGGAACCGGCGGTGAGCGAGCTAGAGTCG
GTCAAGGAGAATAACTGTGCTTCCAACTGCCACCTGGACGGGGAGGCGGCCAAAAAGCTGATGGGCGAGG
AGGCCCTGGCGGGGGGCGACAAGTCAGACCCGAACCTTAATAACCCCGCGGACGAGGACCATGCCTATGC
TCTGCGGATGCTGCCCAAGACCGGCTGCGTGATCCAGCCTGTGCCAAAACCCGCGGAGAAGGCTGCCATG
GCACCGTGCATCATCTCCTCGCCCATGCTCAGCGCCGGGCCTGAGGACCTGGAGCCGCCGCTCAAAAGGA
GGTGCCTCCGAATTAGAAATCAGAATAAGTAA

Translation (873 aa):
MAEMEKEGRPPENKRSRKPAHPVKREINEEMKNFAENTMNELLGWYGYDKVELKDGEDIEFRSYPTDGES
RQHISVLKENSLPKPKLPEDSVISPYNISTGYSGLATGNGLSDSPAGSKDHGSVPIIVPLIPPPFIKPPA
EDDVSNVQIMCAWCQKVGIKRYSLSMGSEVKSFCSEKCFAACRRAYFKRNKARDEDGHAENFPQQHYAKE
TPRLAFKNNCELLVCDWCKHIRHTKEYLDFGDGERRLQFCSAKCLNQYKMDIFYKETQANLPAGLCSTLH
PPMENKAEGTGVQLLTPDSWNIPLTDARRKAPSPVATAGQSQGPGPSASTTVSPSDTANCSVTKIPTPVP
KSIPISETPNIPPVSVQPPASIGPPLGVPPRSPPMVMTNRGPVPLPIFMEQQIMQQIRPPFIRGPPHHAS
NPNSPLSNPMLPGIGPPPGGPRNLGPTSSPMHRPMLSPHIHPPSTPTMPGNPPGLLPPPPPGAPLPSLPF
PPVSMMPNGPMPVPQMMNFGLPSLAPLVPPPTLLVPYPVIVPLPVPIPIPIPIPHVSDSKPPNGFSSNGE
NFIPNAPGDSAAAGGKPSGHSLSPRDSKQGSSKSADSPPGCSGQALSLAPTPAEHGRSEVVDLTRRAGSP
PGPPGAGGQLGFPGVLQGPQDGVIDLTVGHRARLHNVIHRALHAHVKAEREPSAAERRTCGGCRDGHCSP
PAAGDPGPGAPAGPEAAAACNVIVNGTRGAAAEGAKSAEPPPEQPPPPPPPAPPKKLLSPEEPAVSELES
VKENNCASNCHLDGEAAKKLMGEEALAGGDKSDPNLNNPADEDHAYALRMLPKTGCVIQPVPKPAEKAAM
APCIISSPMLSAGPEDLEPPLKRRCLRIRNQNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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