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Report for CCDS29455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29455.1 Public Mus musculus 19 Gal3st3 23 108 98 CCDS HistoryNCBI Gene:545276Re-query CCDS DB by CCDS ID:29455.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061169.6 ENSMUSP00000061517.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061169.6Link to Ensembl Protein Viewer:ENSMUSP00000061517.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000061169Re-query CCDS DB by Protein ID:ENSMUSP00000061517
Original member Current member NCBI NM_001024717.2 NP_001019888.1 Accepted alive Link to Nucleotide Sequence:NM_001024717.2Link to Protein Sequence:NP_001019888.1Re-query CCDS DB by Nucleotide ID:NM_001024717Re-query CCDS DB by Protein ID:NP_001019888Link to BLAST:NP_001019888.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001019888.1 431 P61315 431 100% 0 0

Chromosomal Locations for CCDS 29455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 5302547 5302671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 5306724 5307894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGCCACCTATCCTCCAGCGCTTGCAGCAATCCACCAAGATGATGAGCCACAGGAAAATTCTGCTGTTGG
TGCTAGGGTGCAGCACCGTAAGCCTCCTCATCCACCAGGGGTCGCAGCTCAGTTGGTACCCCAAGTTGTT
CCCTCTGAGCTGCCCGCCTCTGCGAGAATCGCCACCTCGGGCCAAGCACATGGCCGTGGCCTTCCTGAAG
ACTCACAAGACAGCAGGTACTACGGTGCAGAACATCCTGTTCCGCTTCGCAGAACGCCACAACCTCACGG
TGGCCCTGCCTCACCCTAGCTGCGAGCACCAGTTCTGTTACCCGCGAAACTTCTCGGCCCACTTCGTGCA
CCCAGCTACGAGGCCCCCGCACATGCTGGCCAGCCATCTGCGCTTCGACCGTGCAGAACTCGAGCGCCTC
ATGCCTCCAGACACGATCTATGTCACCATCCTGCGCGAACCCGCGGCCATGTTCGAGTCGCTTTTCAGCT
ACTACAACCAGTACTGCCCGGCCTTCAGGCGCGTGCCCAATGCGTCGCTCGAGACTTTCCTGCGCGCACC
CGAGGCCTACTACCGTCCAGGCGAGCACTTCGCCATGTTTGCTCACAACACGCTGGCCTACGACCTTGGA
GGCGACAATGAGCGCAGCCCTCGTGACGACGCAGCCTACCTGGCGGGCCTCATCCGCCAGGTGGAGGAGG
TCTTCTCGCTCGTCATGATCGCGGAGTACTTCGACGAGTCCCTCGTGCTGCTGCGGCGTCTACTGGCCTG
GGACCTGGACGACGTGCTCTACGCCAAGCTCAACGCGCGCGCTGCCTCGTCGCGCCTGGCCACCATCCCC
GAGGCGCTGGCGCGGGCCGCGCGCACCTGGAACGCGCTCGATGCGGGCCTCTACGACCATTTCAACGCCA
CCTTCTGGCGTCGCGTGGCGCGCGCGGGCCGCGCATGCGTGGAGCGCGAAGCGCGCGAGCTGCGCGAGGC
CCGCCAGCGTCTGCTGCGTCGTTGCTTTGGCGACGAGCCGGTGCTGCGACCCGCTGCCCAGATTCGTACA
AAGCAGCTGCAGCCGTGGCAGCCTAGCCGCAAAGTGGACATCATGGGCTATGATCTGCCTAGCGGCGGCG
CTGGCCCTACTACGGAGGCTTGCCTCAAGCTTGCTATGCCCGAGGTGCAGTACTCAAACTATCTGTTGAG
GAAGCAAAAACGCCGCGGTGGTGTGCGGTCCAGGCCAGAATCTGTCCTGGATAATCCTCCCCCTCGGCCC
ATAAGAGCACTGCCCCGTATCCCCCAGGGTACCTGA

Translation (431 aa):
MPPILQRLQQSTKMMSHRKILLLVLGCSTVSLLIHQGSQLSWYPKLFPLSCPPLRESPPRAKHMAVAFLK
THKTAGTTVQNILFRFAERHNLTVALPHPSCEHQFCYPRNFSAHFVHPATRPPHMLASHLRFDRAELERL
MPPDTIYVTILREPAAMFESLFSYYNQYCPAFRRVPNASLETFLRAPEAYYRPGEHFAMFAHNTLAYDLG
GDNERSPRDDAAYLAGLIRQVEEVFSLVMIAEYFDESLVLLRRLLAWDLDDVLYAKLNARAASSRLATIP
EALARAARTWNALDAGLYDHFNATFWRRVARAGRACVEREARELREARQRLLRRCFGDEPVLRPAAQIRT
KQLQPWQPSRKVDIMGYDLPSGGAGPTTEACLKLAMPEVQYSNYLLRKQKRRGGVRSRPESVLDNPPPRP
IRALPRIPQGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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