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Report for CCDS16769.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16769.1 Public Mus musculus 2 Slc23a2 23 108 98 CCDS HistoryNCBI Gene:54338Re-query CCDS DB by CCDS ID:16769.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16769.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028815.14 ENSMUSP00000028815.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028815.14Link to Ensembl Protein Viewer:ENSMUSP00000028815.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028815Re-query CCDS DB by Protein ID:ENSMUSP00000028815
Original member NCBI NM_001355430.1 NP_001342359.1 Updated not alive Link to Nucleotide Sequence:NM_001355430.1Link to Protein Sequence:NP_001342359.1Re-query CCDS DB by Nucleotide ID:NM_001355430Re-query CCDS DB by Protein ID:NP_001342359
Current member NCBI NM_001355430.2 NP_001342359.1 Accepted alive Link to Nucleotide Sequence:NM_001355430.2Link to Protein Sequence:NP_001342359.1Re-query CCDS DB by Nucleotide ID:NM_001355430Re-query CCDS DB by Protein ID:NP_001342359Link to BLAST:NP_001342359.1
Original member NCBI NM_018824.2 NP_061294.2 Updated not alive Link to Nucleotide Sequence:NM_018824.2Link to Protein Sequence:NP_061294.2Re-query CCDS DB by Nucleotide ID:NM_018824Re-query CCDS DB by Protein ID:NP_061294
Current member NCBI NM_018824.3 NP_061294.2 Accepted alive Link to Nucleotide Sequence:NM_018824.3Link to Protein Sequence:NP_061294.2Re-query CCDS DB by Nucleotide ID:NM_018824Re-query CCDS DB by Protein ID:NP_061294Link to BLAST:NP_061294.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342359.1 648 Q9EPR4-1 648 100% 0 0
NP_061294.2 648 Q9EPR4-1 648 100% 0 0

Chromosomal Locations for CCDS 16769.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 132056669 132056901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132058200 132058295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132060663 132060800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132062059 132062188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132065364 132065469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132066718 132066865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132071311 132071467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132071917 132072037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132075499 132075680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132077429 132077493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132078413 132078501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132089096 132089253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132091213 132091329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132094142 132094240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 132101472 132101579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGATGGGTATCGGCAAGAACACGGCATCCAAGTCAGTGGAGGCTGGGGGCTCCACGGAAGGCAAATATG
AAGAGGAGGCGAAGCACTCGAATTTCTTTACTCTCCCGGTGGTGATCAATGGTGGGGCCACATCCAGCGG
AGAGCAGGACAACGAGGACACGGAGCTCATGGCAATCTACACCACAGAGAACGGCATTGCAGAGAAGAGC
TCTCTTGCAGAGACCCTGGACAGCACTGGGAGCCTGGATCCCCAGAGGTCGGATATGATCTACACTATAG
AAGATGTTCCTCCCTGGTACTTGTGCATATTCCTGGGATTGCAGCACTACCTGACGTGTTTCAGTGGCAC
GATCGCGGTGCCCTTTTTGCTGGCTGATGCCATGTGCGTGGGGGATGACCAGTGGGCCACCAGCCAGCTC
ATCGGGACCATTTTCTTCTGCGTGGGAATCACTACATTGCTGCAGACAACATTTGGATGCAGGTTACCCC
TGTTTCAGGCCAGTGCTTTTGCATTTTTGGCCCCTGCTCGAGCCATCCTGTCTTTAGATAAATGGAAATG
TAACACCACAGAGATTACAGTTGCCAATGGAACGGCAGAGCTGTTGGAACACATCTGGCATCCCCGAATC
CAAGAGATCCAGGGGGCTATCATCATGTCCTCACTGATAGAAGTGGTCATTGGCCTCCTTGGCCTGCCTG
GGGCTCTGCTGAGGTATATTGGACCCTTGACCATCACACCCACCGTGGCCCTCATTGGCCTCTCTGGTTT
CCAGGCAGCAGGAGAGAGAGCCGGAAAGCACTGGGGCATTGCCATGCTGACGATTTTCCTAGTGTTACTC
TTCTCACAGTATGCCAGAAATGTTAAATTTCCTCTCCCAATTTACAAATCCAAGAAAGGATGGACGGCAT
ACAAGTTCCAGCTTTTCAAAATGTTTCCTATAATCCTGGCTATCCTCGTGTCCTGGCTGCTGTGCTTCAT
CTTCACGGTGACTGATGTCTTCCCTTCCAACAGCACCGACTATGGCTACTATGCACGCACAGATGCCAGG
AAGGGTGTACTTCTGGTAGCCCCATGGTTTAAGGTTCCATACCCATTTCAGTGGGGGATGCCCACCGTCT
CTGCAGCTGGCGTCATTGGCATGCTCAGTGCCGTCGTAGCCAGTATCATTGAGTCCATCGGTGACTACTA
CGCCTGTGCCAGGCTCTCCTGTGCCCCGCCGCCGCCTATCCATGCAATAAACAGGGGTATTTTCGTGGAG
GGTCTTTCCTGTGTTCTTGATGGCATATTTGGTACCGGGAATGGCTCTACCTCCTCCAGTCCCAATATTG
GAGTTTTGGGAATTACAAAGGTCGGCAGCCGCCGGGTGATCCAGTACGGTGCAGCTCTCATGCTGGGCTT
GGGCATGGTTGGCAAGTTCAGCGCCCTCTTCGCCTCCCTCCCAGACCCTGTGCTCGGAGCCCTCTTCTGC
ACACTCTTTGGAATGATCACGGCGGTCGGCCTCTCGAACCTGCAGTTCATTGACTTGAATTCTTCCCGGA
ACCTGTTTGTGCTTGGATTCTCCATCTTCTTTGGCCTTGTTCTTCCAAGTTACCTCCGACAAAACCCTCT
GGTTACAGGAATAACAGGAATCGACCAAATCCTGAATGTCCTTCTCACCACCGCTATGTTTGTAGGAGGC
TGTGTGGCTTTCATTTTGGACAACACCATCCCAGGTACCCCAGAGGAAAGAGGAATCAAGAAATGGAAGA
AGGGTGTGAGCAAAGGAAGCAAGTCTCTGGACGGCATGGAGTCCTACAATCTGCCATTTGGCATGAACAT
TATTAAAAAGTACCGATGCTTCAGCTACCTGCCCATCAGCCCCACCTTTGCAGGCTACACTTGGAAAGGC
TTTGGGAAGAGTGAGAACAGCCGGAGTTCAGACAAAGATTCCCAGGCCACAGTATAG

Translation (648 aa):
MMGIGKNTASKSVEAGGSTEGKYEEEAKHSNFFTLPVVINGGATSSGEQDNEDTELMAIYTTENGIAEKS
SLAETLDSTGSLDPQRSDMIYTIEDVPPWYLCIFLGLQHYLTCFSGTIAVPFLLADAMCVGDDQWATSQL
IGTIFFCVGITTLLQTTFGCRLPLFQASAFAFLAPARAILSLDKWKCNTTEITVANGTAELLEHIWHPRI
QEIQGAIIMSSLIEVVIGLLGLPGALLRYIGPLTITPTVALIGLSGFQAAGERAGKHWGIAMLTIFLVLL
FSQYARNVKFPLPIYKSKKGWTAYKFQLFKMFPIILAILVSWLLCFIFTVTDVFPSNSTDYGYYARTDAR
KGVLLVAPWFKVPYPFQWGMPTVSAAGVIGMLSAVVASIIESIGDYYACARLSCAPPPPIHAINRGIFVE
GLSCVLDGIFGTGNGSTSSSPNIGVLGITKVGSRRVIQYGAALMLGLGMVGKFSALFASLPDPVLGALFC
TLFGMITAVGLSNLQFIDLNSSRNLFVLGFSIFFGLVLPSYLRQNPLVTGITGIDQILNVLLTTAMFVGG
CVAFILDNTIPGTPEERGIKKWKKGVSKGSKSLDGMESYNLPFGMNIIKKYRCFSYLPISPTFAGYTWKG
FGKSENSRSSDKDSQATV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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