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Report for CCDS25999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25999.1 Public Mus musculus 12 Fut8 23 108 98 CCDS HistoryNCBI Gene:53618Re-query CCDS DB by CCDS ID:25999.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000062804.7 ENSMUSP00000054530.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000062804.7Link to Ensembl Protein Viewer:ENSMUSP00000054530.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000062804Re-query CCDS DB by Protein ID:ENSMUSP00000054530
Original member Current member EBI ENSMUST00000171770.9 ENSMUSP00000130845.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171770.9Link to Ensembl Protein Viewer:ENSMUSP00000130845.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000171770Re-query CCDS DB by Protein ID:ENSMUSP00000130845
Original member Current member EBI ENSMUST00000177595.8 ENSMUSP00000136327.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000177595.8Link to Ensembl Protein Viewer:ENSMUSP00000136327.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000177595Re-query CCDS DB by Protein ID:ENSMUSP00000136327
Original member Current member NCBI NM_001252614.1 NP_001239543.1 Accepted alive Link to Nucleotide Sequence:NM_001252614.1Link to Protein Sequence:NP_001239543.1Re-query CCDS DB by Nucleotide ID:NM_001252614Re-query CCDS DB by Protein ID:NP_001239543Link to BLAST:NP_001239543.1
Original member Current member NCBI NM_016893.5 NP_058589.2 Accepted alive Link to Nucleotide Sequence:NM_016893.5Link to Protein Sequence:NP_058589.2Re-query CCDS DB by Nucleotide ID:NM_016893Re-query CCDS DB by Protein ID:NP_058589Link to BLAST:NP_058589.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001239543.1 575 Q9WTS2 575 100% 0 0
NP_058589.2 575 Q9WTS2 575 100% 0 0

Chromosomal Locations for CCDS 25999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 77332127 77332329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 77364969 77365084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 77365197 77365359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 77393723 77393837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 77412712 77412949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 77448473 77448719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 77450100 77450276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 77464060 77464210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 77474999 77475316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1728 nt):
ATGCGGGCATGGACTGGTTCCTGGCGTTGGATTATGCTCATTCTTTTTGCCTGGGGGACCTTGTTATTTT
ATATAGGTGGTCATTTGGTTCGAGATAATGACCACCCTGATCACTCCAGCAGAGAACTCTCCAAGATTCT
TGCAAAGCTTGAACGCTTAAAACAGCAAAATGAAGACTTGAGGCGAATGGCTGAGTCTCTCCGAATACCA
GAAGGCCCCATTGACCAGGGGACAGCTACAGGAAGAGTCCGTGTTTTAGAAGAACAGCTTGTTAAGGCCA
AAGAACAGATTGAAAATTACAAGAAACAAGCTAGAAATGGTCTGGGGAAGGATCATGAAATCTTAAGAAG
GAGGATTGAAAATGGAGCTAAAGAGCTCTGGTTTTTTCTACAAAGCGAACTGAAGAAATTAAAGCATTTA
GAAGGAAATGAACTCCAAAGACATGCAGATGAAATTCTTTTGGATTTAGGACACCATGAAAGGTCTATCA
TGACAGATCTATACTACCTCAGTCAAACAGATGGAGCAGGGGATTGGCGTGAAAAAGAGGCCAAAGATCT
GACAGAGCTGGTCCAGCGGAGAATAACATATCTCCAGAATCCTAAGGACTGCAGCAAAGCCAGGAAGCTG
GTGTGTAACATCAATAAAGGCTGTGGCTATGGTTGTCAACTCCATCACGTGGTCTACTGTTTCATGATTG
CTTATGGCACCCAGCGAACACTCATCTTGGAATCTCAGAATTGGCGCTATGCTACTGGTGGATGGGAGAC
TGTGTTTAGACCTGTAAGTGAGACATGTACAGACAGATCTGGCCTCTCCACTGGACACTGGTCAGGTGAA
GTAAATGACAAAAACATTCAAGTGGTCGAGCTCCCCATTGTAGACAGCCTCCATCCTCGGCCTCCTTACT
TACCACTGGCTGTTCCAGAAGACCTTGCAGACCGACTCCTAAGAGTCCATGGTGACCCTGCAGTGTGGTG
GGTGTCCCAGTTTGTCAAATACTTGATTCGTCCACAACCTTGGCTGGAAAAGGAAATAGAAGAAGCCACC
AAGAAGCTTGGCTTCAAACATCCAGTTATTGGAGTCCATGTCAGACGCACAGACAAAGTGGGAACAGAAG
CAGCCTTCCACCCCATCGAGGAGTACATGGTACACGTTGAAGAACATTTTCAGCTTCTCGCACGCAGAAT
GCAAGTGGATAAAAAAAGAGTATATCTGGCTACTGATGATCCTACTTTGTTAAAGGAGGCAAAGACAAAG
TACTCCAATTATGAATTTATTAGTGATAACTCTATTTCTTGGTCAGCTGGACTACACAATCGGTACACAG
AAAATTCACTTCGGGGTGTGATCCTGGATATACACTTTCTCTCACAGGCTGACTTTCTAGTGTGTACTTT
TTCATCCCAGGTCTGTCGGGTTGCTTATGAAATCATGCAAACCCTGCATCCTGATGCCTCTGCGAACTTC
CATTCTTTGGATGACATCTACTATTTTGGAGGCCAAAATGCCCACAATCAGATTGCTGTTTATCCTCACA
AACCTCGAACTGAAGAGGAAATTCCAATGGAACCTGGAGATATCATTGGTGTGGCTGGAAACCATTGGGA
TGGTTATTCTAAAGGTATCAACAGAAAACTTGGAAAAACAGGCTTATATCCCTCCTACAAAGTCCGAGAG
AAGATAGAAACAGTCAAGTATCCCACATATCCTGAAGCTGAAAAATAG

Translation (575 aa):
MRAWTGSWRWIMLILFAWGTLLFYIGGHLVRDNDHPDHSSRELSKILAKLERLKQQNEDLRRMAESLRIP
EGPIDQGTATGRVRVLEEQLVKAKEQIENYKKQARNGLGKDHEILRRRIENGAKELWFFLQSELKKLKHL
EGNELQRHADEILLDLGHHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQRRITYLQNPKDCSKARKL
VCNINKGCGYGCQLHHVVYCFMIAYGTQRTLILESQNWRYATGGWETVFRPVSETCTDRSGLSTGHWSGE
VNDKNIQVVELPIVDSLHPRPPYLPLAVPEDLADRLLRVHGDPAVWWVSQFVKYLIRPQPWLEKEIEEAT
KKLGFKHPVIGVHVRRTDKVGTEAAFHPIEEYMVHVEEHFQLLARRMQVDKKRVYLATDDPTLLKEAKTK
YSNYEFISDNSISWSAGLHNRYTENSLRGVILDIHFLSQADFLVCTFSSQVCRVAYEIMQTLHPDASANF
HSLDDIYYFGGQNAHNQIAVYPHKPRTEEEIPMEPGDIIGVAGNHWDGYSKGINRKLGKTGLYPSYKVRE
KIETVKYPTYPEAEK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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