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Report for CCDS29442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29442.1 Public Mus musculus 19 Bbs1 23 108 98 CCDS HistoryNCBI Gene:52028Re-query CCDS DB by CCDS ID:29442.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29442.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053506.7 ENSMUSP00000055321.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053506.7Link to Ensembl Protein Viewer:ENSMUSP00000055321.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000053506Re-query CCDS DB by Protein ID:ENSMUSP00000055321
Original member Current member NCBI NM_001033128.3 NP_001028300.1 Accepted alive Link to Nucleotide Sequence:NM_001033128.3Link to Protein Sequence:NP_001028300.1Re-query CCDS DB by Nucleotide ID:NM_001033128Re-query CCDS DB by Protein ID:NP_001028300Link to BLAST:NP_001028300.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028300.1 593 Q3V3N7 593 100% 0 0

Chromosomal Locations for CCDS 29442.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 4890672 4890758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4890990 4891076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4891653 4891787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4892888 4893021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4894261 4894419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4894962 4895031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4897280 4897438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4897574 4897694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4899200 4899306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4900491 4900622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4902843 4902915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4903014 4903052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4903146 4903192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4903702 4903974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4905985 4906019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4906142 4906218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 4906556 4906602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1782 nt):
ATGGCTGCGGCGTCTTCATCGGATTCTGACAGCGGGCGAGCTGAGAGCAACGAAGCCAATTCTAAATGGC
TGGACGCACACTACGACCCCATGGCCAACATCCACACCTTCTCCTCCTGCCTGTCACTGGCAGATTTGCA
TGGCGATGGGGAGTACAAGCTGGTGGTGGGAGACCTTGGCCCAGGTGGGCAGCAGCCCCGCCTGAAGGTG
CTCAAAGGACCCACAGTGCTGACGGAGAGCCCACTGCCTGCCCTGCCAGCCTCGGCTGCCACCTTCCTCA
TGGACCAACACGAGCCCAGGACACCTGCCCTGGCACTCGCCTCAGGGCCTTGTGTCTATGTTTATAAGAA
CCTTAGACCCTACTTCAAGTTCAGCCTGCCCCAGTTACCTCCAAACCCTTTGGAACAGGACGTTTGGAAC
CAAGCCAAAGAGGACCAGATTGACCCCTTAACCCTGAAGGAGATGCTGGAGGACATCAGGGAAAAGGCAG
ACGTGCCTTTGTCTGTGCAGTCACTCAGGTTTCTGCAGCTGGAGCTGAGTGAAATGGAGGCGTTTGTGAA
CCAGCACAAGTCCAAGGTTATCAAGCGCCAGACAGTCATCACCACCATGACCACCCTGAAGAAGAACCTG
GCAGATGAGGACGCAGCGTCCTGTCTGGTGCTAGGCACTGAGAGCAAGGAACTCCTAGTGCTGGACCCTG
AGGCCTTCACCATTTTGGCCAAGATGAGCCTGCCCAGTGTCCCTGTCTTCCTGGAGGTTTCCGGCCAGTT
TGATGTGGAGTTCCGGTTGACTGCTGCCTGCCGAAATGGGAGCATCTATATCCTGAGAAGAGACTCCAAA
CACCCCAAGTACTGCATCGAGTTGAGTGCCCAGCCAGTGGGGCTGGTCCGGGTACACAAGGTCCTGGTGG
TGGGCAGCACCCAAGAGAGTCTGCATGGCTTCACCCACAAGGGTAAGAAGCTGTGGACAGTGCAGATGCC
TGCAGCCATCCTGACCATGAACCTCCTGGAGCAGCGATCCCGAGGCCTGCAAGCTGTCATGGCTGCTCTG
GCCAATGGGGAAGTCCGAATTTACCGAGACAAGGCCCTGCTCAATGTCATCCATGCCCCGGATGCAGTAA
CCAGCCTGTGCTTTGGCCGATACGGGCGAGAAGACAACACCCTCATCATGACTACTAGAGGTGGCGGCCT
GATCATCAAGATCCTGAAGCGCACAGCAGTGTTTGTGGAAGGGACGGGTGAGGTGGGCCCACCGCTAGCA
CAGACCACAAAACTCAGTGTGCCCCGAAAGACCCGGCTGTATGTGGATCAGACCCTGCGGGAGCGGGAAG
CTGGCACAGCCATGCACCGGACCTTCCAGACCGACCTCTACCTGCTGCGCCTGCGAGCTGCCAGAGCCTA
TGTCCAGGCCCTGGAGTCCAGCCTGAGCCCCATGTCAACCACAGCTCGCGAGCCCCTCAAGCTGCATGCT
GTGGTTCAAGGCCTGGGCCCCACCTTTAAGCTCACACTTCACCTGCAGAATACCTCAACGGCTCGACCCG
TTCTGGGGCTGCATGTCTGCTTCCTGTACAACAAGGCGCTCTATGCCCTGCCTCAGGCTTTCTTTAAGGT
TCCCTTGCTGGTACCAGGACTCAGTTACCCACTGGAAACCTTTGTGGAGAGTCTCAGTAGCAAGGGCATC
TCAGACATGATCAAGGTGCTAGTGCTTCGGGAAGGCCAGAGTGCTCCCCTGCTGAGTGCCCACATCAACA
TGCCTGTGAGTGAGGGTCTGGCAGCTGCCTGA

Translation (593 aa):
MAAASSSDSDSGRAESNEANSKWLDAHYDPMANIHTFSSCLSLADLHGDGEYKLVVGDLGPGGQQPRLKV
LKGPTVLTESPLPALPASAATFLMDQHEPRTPALALASGPCVYVYKNLRPYFKFSLPQLPPNPLEQDVWN
QAKEDQIDPLTLKEMLEDIREKADVPLSVQSLRFLQLELSEMEAFVNQHKSKVIKRQTVITTMTTLKKNL
ADEDAASCLVLGTESKELLVLDPEAFTILAKMSLPSVPVFLEVSGQFDVEFRLTAACRNGSIYILRRDSK
HPKYCIELSAQPVGLVRVHKVLVVGSTQESLHGFTHKGKKLWTVQMPAAILTMNLLEQRSRGLQAVMAAL
ANGEVRIYRDKALLNVIHAPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILKRTAVFVEGTGEVGPPLA
QTTKLSVPRKTRLYVDQTLREREAGTAMHRTFQTDLYLLRLRAARAYVQALESSLSPMSTTAREPLKLHA
VVQGLGPTFKLTLHLQNTSTARPVLGLHVCFLYNKALYALPQAFFKVPLLVPGLSYPLETFVESLSSKGI
SDMIKVLVLREGQSAPLLSAHINMPVSEGLAAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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