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Report for CCDS25642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25642.1 Public Mus musculus 11 Mrps7 23 108 98 CCDS HistoryNCBI Gene:50529Re-query CCDS DB by CCDS ID:25642.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058109.8 ENSMUSP00000053033.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058109.8Link to Ensembl Protein Viewer:ENSMUSP00000053033.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000058109Re-query CCDS DB by Protein ID:ENSMUSP00000053033
Original member Current member NCBI NM_025305.3 NP_079581.1 Accepted alive Link to Nucleotide Sequence:NM_025305.3Link to Protein Sequence:NP_079581.1Re-query CCDS DB by Nucleotide ID:NM_025305Re-query CCDS DB by Protein ID:NP_079581Link to BLAST:NP_079581.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079581.1 242 Q80X85 242 100% 0 0

Chromosomal Locations for CCDS 25642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115604161 115604243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115604721 115604912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115605023 115605086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115605970 115606137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115606818 115607039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (729 nt):
ATGGCTGCCCCCGCGCTGCGCGCTCCGCTTCGCTGGTCCGGGCTGGCCCTGGGAGTGAGGTGCGCCGTCT
GGAACCTTCCAGGGCTCACACAGGTGAGGGGGAGCCGCTATGCCCCCGAATTCCGGGAGCCCTTGATTGA
CAAGGAATATTACCGCAAGCCGGTGGCGGAACTCACCGAAGAGGAGAAGTATGACCAGGAGCTCAAGAAA
ACCCAGTTTATCAAAGCTGCGGCCGCGACTGAAACCAGCTCGGTGTTCGCAGACCCGGTCATCAGCAAAT
TCACCAACATGATGATGAAGGGAGGCAACAAAGTTCTGGCCCGGTCTCTCATGGCTCAGACTCTGGAAGC
TGTGAAAAGGAAGCAGTTTGAAAAGTACCGTGCTGCCTCTGCGGAGGAACAGGCCACCATTGAACGGAAC
CCCTACAGGATCTTCCACGAGGCACTCAAAAACTGTGAGCCTGTGATTGGGTTGGTGCCGATCCTCAAAG
GGGGCCATTTCTACCAGGTCCCCGTGCCTCTCGCTGACCGACGTCGGCGCTTCCTGGCCATGAAGTGGAT
GATCACAGAGTGCCGAGAGAATAAACCGCGGCGGACACTTATGCCAGAGAAACTGTCACATGAGCTGCTG
GAGGCTTTTCATAACCGGGGTCCCGTGATCAAGAGGAAGCACAATATGCATAAGATGGCAGAGGCCAACC
GTGCCCTGGCCCACTACCGCTGGTGGTAG

Translation (242 aa):
MAAPALRAPLRWSGLALGVRCAVWNLPGLTQVRGSRYAPEFREPLIDKEYYRKPVAELTEEEKYDQELKK
TQFIKAAAATETSSVFADPVISKFTNMMMKGGNKVLARSLMAQTLEAVKRKQFEKYRAASAEEQATIERN
PYRIFHEALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMITECRENKPRRTLMPEKLSHELL
EAFHNRGPVIKRKHNMHKMAEANRALAHYRWW


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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