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Report for CCDS37142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37142.1 Public Mus musculus 15 Cbx6 23 108 98 CCDS HistoryNCBI Gene:494448Re-query CCDS DB by CCDS ID:37142.1See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37142.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109627.7 ENSMUSP00000105255.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109627.7Link to Ensembl Protein Viewer:ENSMUSP00000105255.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109627Re-query CCDS DB by Protein ID:ENSMUSP00000105255
Original member Current member NCBI NM_028763.3 NP_083039.2 Accepted alive Link to Nucleotide Sequence:NM_028763.3Link to Protein Sequence:NP_083039.2Re-query CCDS DB by Nucleotide ID:NM_028763Re-query CCDS DB by Protein ID:NP_083039Link to BLAST:NP_083039.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083039.2 414 Q9DBY5 414 100% 0 0

Chromosomal Locations for CCDS 37142.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 79827980 79828978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79833512 79833578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79833702 79833767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79833915 79833958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 79834143 79834211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGGAGCTGTCTGCAGTAGGCGAGCGGGTCTTCGCGGCCGAATCCATCATTAAACGCCGGATCCGCAAGG
GACGCATCGAGTACCTGGTGAAATGGAAAGGGTGGGCGATCAAGTACAGCACTTGGGAGCCAGAGGAGAA
CATTCTGGATTCGAGGCTCATCGCAGCCTTCGAGCAGAAGGAAAGGGAACGTGAGCTGTATGGGCCCAAG
AAGAGGGGACCTAAACCCAAAACTTTCCTCCTAAAGGCCCGGGCCCAGGCGGAGGCCCTCCGCATCAGTG
ATGTGCATTTCTCTGTCAAGCCGAGCGCCAGCGCCTCCTCGCCCAAGCTGCACTCCAGCGCTGCGGTGCA
CCGGCTCAAGAAAGACATCCGCCGCTGCCACCGTATGTCTCGCCGTCCCCTGCCACGACCAGACCCACAA
GGGGGTAGCCCTGGCCTACGCCCACCCATCTCGCCCTTTTCTGAGACCGTGCGCATCATCAACCGTAAGG
TGAAGCCCCGGGAGCCCAAGCGGAACCGCATCATCCTGAACCTGAAGGTGATTGACAAGGGTCCGGGAGG
TGGCAGCACTGCGCAGGGCACCGGGGCACTGGCCCGCCCGAAAGTCCCCTCGCGGAACCGGGTCATTGGG
AAGAGCAAGAAGTTCAGCGAGAGCATGCTCCGTACCCAGATCCGCCACATGAAGTTTGGCACATTTGCGC
TCTACAAGCCCCCTCCTGCCCCTCTGGCGCCCTCTACTGCGGGCAAAGCCGATGTGGCCTCCTCGGGGCC
TGGGCTGCTCCTGGCCACCCCAGCTGCTGCCCCCTTTGACGCACACAGCTCCAGCTCTTCCGGCTGCCCC
TCACCCACACTGCAGTCCTCTGACCCAGACGATGCACCACCCAAGCTACTCCCGGAGACCCTGAGCCGAT
CTGTGCCCAACTGGCGAGAGTCAGAGGTGCTCGATCTGTCCATCCCTCCTGAGGCGGCTGCCACCGGCCA
GCGGGTGCCTCCTGATGTCACTGGTGCTGCGGACCAGGCGCTACATACAGCTCTGGAGCCCACAGGTGCT
GGCTCCTCCGAGCCTGAGGCTGGGGACTGGCGCCCCGAGATGTCGCCATGCTCCAATGTAGTTGTCACAG
ATGTCACCAGCAACCTCCTGACCGTGACCATCAAGGAATTCTGCAGCCCGGAGGATTTTGAGAAGGTGGC
CGCTGGGGTGGCAGGTGCTACAGGGGGCGGGGGTGGCACTGGGCCAAGTAAGTGA

Translation (414 aa):
MELSAVGERVFAAESIIKRRIRKGRIEYLVKWKGWAIKYSTWEPEENILDSRLIAAFEQKERERELYGPK
KRGPKPKTFLLKARAQAEALRISDVHFSVKPSASASSPKLHSSAAVHRLKKDIRRCHRMSRRPLPRPDPQ
GGSPGLRPPISPFSETVRIINRKVKPREPKRNRIILNLKVIDKGPGGGSTAQGTGALARPKVPSRNRVIG
KSKKFSESMLRTQIRHMKFGTFALYKPPPAPLAPSTAGKADVASSGPGLLLATPAAAPFDAHSSSSSGCP
SPTLQSSDPDDAPPKLLPETLSRSVPNWRESEVLDLSIPPEAAATGQRVPPDVTGAADQALHTALEPTGA
GSSEPEAGDWRPEMSPCSNVVVTDVTSNLLTVTIKEFCSPEDFEKVAAGVAGATGGGGGTGPSK


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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