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Report for CCDS22877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22877.1 Public Mus musculus 9 Zfp560 23 108 98 CCDS HistoryNCBI Gene:434377Re-query CCDS DB by CCDS ID:22877.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 22877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068079.13 ENSMUSP00000065620.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068079.13Link to Ensembl Protein Viewer:ENSMUSP00000065620.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000068079Re-query CCDS DB by Protein ID:ENSMUSP00000065620
Original member Current member NCBI NM_001004190.3 NP_001004190.2 Accepted alive Link to Nucleotide Sequence:NM_001004190.3Link to Protein Sequence:NP_001004190.2Re-query CCDS DB by Nucleotide ID:NM_001004190Re-query CCDS DB by Protein ID:NP_001004190Link to BLAST:NP_001004190.2

Chromosomal Locations for CCDS 22877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 20347300 20349159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20349581 20349663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20350532 20350612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20351838 20351964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20352753 20352841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 20354064 20354088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2265 nt):
ATGGAAGCTATCAGTTTGTCCTATGGTTTATTTTCTAGGAACCCAAGCTACTTTCATAATGAAAAAACAG
AGATGGAAAAGACGGTGTCTGACTGCTGGACAAGTAGTTACCAGGAGTCAGTGACCTTTGAGGATGTGGC
TGTAGACTTCACCCAGGAGGAATGGATTTTATTGGACACAAAACAACGGAACCTTTACAGAGAGGTGATG
CTGGAGAACTACCAGAACCTGGCTACATTAGGATGTCAGCTCATCAAATCTAGATACAGCTTTTGCTTGG
AGGCTGAAGAGTTGAGAGTAGTCAAGAAAAGAGTTCACCAAGACTGGGCTATACAACTTAACCCCAGAGG
GACAATGTTTCAGCGGGATATTTTTCAGTTAAAAATGTCAAATGAGATACAACTGCCAAATAGCCACAAT
GGAAAGGAGCTCTGTGACATTAAGCCACCTGGAGAAATCATCAAAGAGCCTCCATGCAGTCTGACATACA
TAGGTATTGAAAACACAGGGAACATTTATGATTGTGTTCAGTATGGACAGCTCTTTCCTGTTTGTCCTAA
GGAGACTTCCTCTGCAGACACTGGTCCTGGATTACGCCAGTATGGAAAAGACTTCAGTATGATTGCAAGT
ACAGCTTACCAGACAACATGTGTACAAAGCAAATTCATTGAATCCAGTGAATTTCAGCAAGTCTTTGATA
GTCAGTCATCCCTTCAGAGGCCTGGGGGAAGTCACAGTGAAGACAAACTCTCTGAGTCGGTGCAGTGTGG
TGATACTTTTAGTCCAGCCTTGAGTCATGCTGAGAGTGCTCAAACATGCACTGGAAAAAAATCCTATGAA
TGTAAGGAATGTGGGAAGAGTTTTAAATATTCTGCCAACCTTAATATTCATATGCGTACTCACACTGGCG
AGAAACCTTACCAATGTAAGGAATGTGGGAAAGCCTTTTCTAGGTGTTATCCACTAACTCAGCACTTAAA
AACTCACACTGAAGAGAAGCCCTTTGAATGTAAGGTTTGTGGGAAATGCTTTAGAAATTCCTCATGTCTT
AATGACCACTTTCGGGTTCACACTGGAATAAAACCCTATAAATGTAAGGACTGTGGCAAAGCCTTTACCG
GGCGATCTGGCCTTAGTAAACATTTACCAACACATACTGGAGAGAAGCCTTACGAATGTAAGGAGTGTGG
GAAAGCCTTTCCTTCAACCTCAGGCCTTATTAAACATATGAAAAGTCACATGGGAGAGAGACCCTTTGAA
TGTGATCACTGTGGAAAGGCCTTTGCTTCTTCCTCAACCCTTATTACACATTTGAGAACACACACTGGAG
AGAAGCCCTTCGAGTGTCAAGTCTGTGGGAAGGCATTCACATGTTCTTCTTATCTTCGAATTCACATGCG
GACTCACACTGGAGAGAAGCCCTATGTATGTAAGGAGTGTGGCAGAGCCTTCACTGAGCGCACAAGCCTT
ACTAAACATTTACGAACACATACTGGAGAAAATCCCTTTGAGTGCAATATGTGTGGAAAAGCGTTTGCAT
GTTCCTCCTACCTTCATAATCACATACGGACTCACACTGGAGAGAAACCTTATGTATGTAAGGAATGTGG
GAAAGCCTTCACTGTTTCTTCACATCTAAGTAAGCATGTAAGAATTCACACAGGAGAGAAACCCCATAAG
TGTGAGGAGTGTGGGAAAGCATTCACTGTGCGCTCTGGCCTTACAAAACATATACGAACTCACACTGGGG
AGAAGCCCTACAATTGTAAAGAATGTGGGAAAGCGTTCACTACATCCTCAGGCCTCCTTGAGCATAAAAG
AAGTCACACAGGAGAGAAGCCATATGAATGTGACCAGTGTGGAAAGGCCTTTGCTTCTTCCTCCTATCTT
ATTGCACATTTGAGAATTCACACTGGAGAGAAGCCCTTTGAGTGTAATGAGTGTGGGAAAGCTTTTACTT
GTTCCTCCTACCTTCATATTCATATGCGGACTCACACTGGAGAGAAGCCCTATGACTGTAAGGAGTGTGG
GAAAACATTTGCTGTTTACTCTCATCTAAGTAAACATGTAAGGATTCACAGTGGAGAGAAAGCCTACACT
TGTAAAAGTGATGGAATAGCCTTCAGTCGTTCTCATCGTACAGAACACTTGAAAAGTCTTGAGATAAATT
CTTTTGTTGGAGGGAATGAAGAAACTGCTTTAGAAAGTTCTATTGCTTTAACGGTGCATCCAAATTCACA
ATGGCAAGAAAGCTTATCAGTGTAA

Translation (754 aa):
MEAISLSYGLFSRNPSYFHNEKTEMEKTVSDCWTSSYQESVTFEDVAVDFTQEEWILLDTKQRNLYREVM
LENYQNLATLGCQLIKSRYSFCLEAEELRVVKKRVHQDWAIQLNPRGTMFQRDIFQLKMSNEIQLPNSHN
GKELCDIKPPGEIIKEPPCSLTYIGIENTGNIYDCVQYGQLFPVCPKETSSADTGPGLRQYGKDFSMIAS
TAYQTTCVQSKFIESSEFQQVFDSQSSLQRPGGSHSEDKLSESVQCGDTFSPALSHAESAQTCTGKKSYE
CKECGKSFKYSANLNIHMRTHTGEKPYQCKECGKAFSRCYPLTQHLKTHTEEKPFECKVCGKCFRNSSCL
NDHFRVHTGIKPYKCKDCGKAFTGRSGLSKHLPTHTGEKPYECKECGKAFPSTSGLIKHMKSHMGERPFE
CDHCGKAFASSSTLITHLRTHTGEKPFECQVCGKAFTCSSYLRIHMRTHTGEKPYVCKECGRAFTERTSL
TKHLRTHTGENPFECNMCGKAFACSSYLHNHIRTHTGEKPYVCKECGKAFTVSSHLSKHVRIHTGEKPHK
CEECGKAFTVRSGLTKHIRTHTGEKPYNCKECGKAFTTSSGLLEHKRSHTGEKPYECDQCGKAFASSSYL
IAHLRIHTGEKPFECNECGKAFTCSSYLHIHMRTHTGEKPYDCKECGKTFAVYSHLSKHVRIHSGEKAYT
CKSDGIAFSRSHRTEHLKSLEINSFVGGNEETALESSIALTVHPNSQWQESLSV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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