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Report for CCDS12607.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12607.1 Public Homo sapiens 19 LIPE 24 110 108 CCDS HistoryNCBI Gene:3991Re-query CCDS DB by CCDS ID:12607.1See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12607.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000244289.9 ENSP00000244289.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000244289.9Link to Ensembl Protein Viewer:ENSP00000244289.3Re-query CCDS DB by Nucleotide ID:ENST00000244289Re-query CCDS DB by Protein ID:ENSP00000244289
Original member Current member NCBI NM_005357.4 NP_005348.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005357.4Link to Protein Sequence:NP_005348.2Re-query CCDS DB by Nucleotide ID:NM_005357Re-query CCDS DB by Protein ID:NP_005348Link to BLAST:NP_005348.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005348.2 1076 Q05469-1 1076 100% 0 0

Chromosomal Locations for CCDS 12607.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 42401812 42402075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42402607 42403031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42405385 42405561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42406161 42406388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42407174 42407468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42407606 42407791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42407976 42408121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42408232 42408322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42410307 42410842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 42426267 42427149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3231 nt):
ATGGAGCCAGGTTCTAAGTCAGTGTCTAGGTCAGACTGGCAACCTGAACCACACCAGAGGCCTATAACCC
CGCTAGAGCCTGGGCCAGAAAAGACACCCATAGCCCAGCCAGAATCGAAGACTCTGCAGGGATCCAATAC
CCAACAGAAGCCTGCTTCAAACCAAAGACCCCTCACCCAGCAGGAGACCCCTGCACAACATGATGCTGAA
TCCCAGAAGGAACCTAGAGCCCAACAAAAATCTGCTTCACAAGAGGAATTTCTTGCCCCACAGAAGCCCG
CACCACAGCAATCACCTTACATCCAAAGGGTGCTGCTCACTCAACAGGAAGCTGCCTCCCAGCAGGGACC
TGGGCTAGGAAAAGAATCTATAACTCAACAGGAGCCAGCATTGAGACAAAGACATGTAGCCCAGCCAGGG
CCTGGGCCAGGAGAGCCACCTCCAGCTCAACAAGAAGCTGAATCAACACCTGCGGCCCAGGCTAAACCTG
GAGCCAAAAGGGAGCCATCTGCCCCGACTGAATCTACGTCCCAAGAGACACCTGAACAGTCAGACAAGCA
AACAACGCCAGTCCAGGGAGCCAAATCCAAGCAGGGATCTTTGACAGAGCTGGGATTTCTAACAAAACTT
CAGGAACTATCCATACAGCGATCAGCCCTAGAGTGGAAGGCACTTTCTGAGTGGGTCACAGATTCTGAGT
CAGAATCAGATGTGGGATCATCTTCAGACACAGATTCTCCAGCCACGATGGGTGGAATGGTGGCCCAGGG
AGTGAAGCTAGGCTTCAAAGGAAAATCTGGTTATAAAGTGATGTCAGGATACAGTGGGACGTCGCCACAT
GAGAAAACCAGTGCTCGGAATCACAGACACTACCAGGATACAGCCTCAAGGCTCATCCACAACATGGACC
TGCGCACAATGACACAGTCGCTGGTGACTCTGGCGGAGGACAACATAGCCTTCTTCTCGAGCCAGGGTCC
TGGGGAAACGGCCCAGCGGCTGTCAGGCGTTTTTGCCGGTGTACGGGAGCAGGCGCTGGGGCTGGAGCCG
GCCCTGGGCCGCCTGCTGGGTGTGGCGCACCTCTTTGACCTGGACCCAGAGACACCGGCCAACGGGTACC
GCAGCCTAGTGCACACAGCCCGCTGCTGCCTGGCGCACCTCCTGCACAAATCCCGCTATGTGGCCTCCAA
CCGCCGCAGCATCTTCTTCCGCACCAGCCACAACCTGGCCGAGCTGGAGGCCTACCTGGCTGCCCTCACC
CAGCTCCGCGCTCTGGTCTACTACGCCCAGCGCCTGCTGGTTACCAATCGGCCGGGGGTACTCTTCTTTG
AGGGCGACGAGGGGCTCACCGCCGACTTCCTCCGGGAGTATGTCACGCTGCATAAGGGATGCTTCTATGG
CCGCTGCCTGGGCTTCCAGTTCACGCCTGCCATCCGGCCATTCCTGCAGACCATCTCCATTGGGCTGGTG
TCCTTCGGGGAGCACTACAAACGCAACGAGACAGGCCTCAGTGTGGCCGCCAGCTCTCTCTTCACCAGCG
GCCGCTTTGCCATCGACCCCGAGCTGCGTGGGGCTGAGTTTGAGCGGATCACACAGAACCTGGACGTGCA
CTTCTGGAAAGCCTTCTGGAACATCACCGAGATGGAAGTGCTATCGTCTCTGGCCAACATGGCATCGGCC
ACCGTGAGGGTAAGCCGCCTGCTCAGCCTGCCACCCGAAGCCTTTGAGATGCCACTGACTGCCGACCCCA
CGCTCACGGTCACCATCTCACCCCCACTGGCCCACACAGGCCCTGGGCCCGTCCTCGTCAGGCTCATCTC
CTATGACCTGCGTGAAGGACAGGACAGTGAGGAGCTCAGCAGCCTGATAAAGTCCAACGGCCAACGGAGC
CTGGAGCTGTGGCCGCGCCCCCAGCAGGCACCCCGCTCGCGGTCCCTGATAGTGCACTTCCACGGCGGTG
GCTTTGTGGCCCAGACCTCCAGATCCCACGAGCCCTACCTCAAGAGCTGGGCCCAGGAGCTGGGCGCCCC
CATCATCTCCATCGACTACTCCCTGGCCCCTGAGGCCCCCTTCCCCCGTGCGCTGGAGGAGTGCTTCTTC
GCCTACTGCTGGGCCATCAAGCACTGCGCCCTCCTTGGCTCAACAGGGGAACGAATCTGCCTTGCGGGGG
ACAGTGCAGGCGGGAACCTCTGCTTCACCGTGGCTCTTCGGGCAGCAGCCTACGGGGTGCGGGTGCCAGA
TGGCATCATGGCAGCCTACCCGGCCACAATGCTGCAGCCTGCCGCCTCTCCCTCCCGCCTGCTGAGCCTC
ATGGACCCCTTGCTGCCCCTCAGTGTGCTCTCCAAGTGTGTCAGCGCCTATGCTGGTGCAAAGACGGAGG
ACCACTCCAACTCAGACCAGAAAGCCCTCGGCATGATGGGGCTGGTGCGGCGGGACACAGCCCTGCTCCT
CCGAGACTTCCGCCTGGGTGCCTCCTCATGGCTCAACTCCTTCCTGGAGTTAAGTGGGCGCAAGTCCCAG
AAGATGTCGGAGCCCATAGCAGAGCCGATGCGCCGCAGTGTGTCTGAAGCAGCACTGGCCCAGCCCCAGG
GCCCACTGGGCACGGATTCCCTCAAGAACCTGACCCTGAGGGACTTGAGCCTGAGGGGAAACTCCGAGAC
GTCGTCGGACACCCCCGAGATGTCGCTGTCAGCTGAGACACTTAGCCCCTCCACACCCTCCGATGTCAAC
TTCTTATTACCACCTGAGGATGCAGGGGAAGAGGCTGAGGCCAAAAATGAGCTGAGCCCCATGGACAGAG
GCCTGGGCGTCCGTGCCGCCTTCCCCGAGGGTTTCCACCCCCGACGCTCCAGCCAGGGTGCCACACAGAT
GCCCCTCTACTCCTCACCCATAGTCAAGAACCCCTTCATGTCGCCGCTGCTGGCACCCGACAGCATGCTC
AAGAGCCTGCCACCTGTGCACATCGTGGCGTGCGCGCTGGACCCCATGCTGGACGACTCGGTCATGCTCG
CGCGGCGACTGCGCAACCTGGGCCAGCCGGTGACGCTGCGCGTGGTGGAGGACCTGCCGCACGGCTTCCT
GACCCTAGCGGCGCTGTGCCGCGAGACGCGCCAGGCCGCAGAGCTGTGCGTGGAGCGCATCCGCCTCGTC
CTCACTCCTCCCGCCGGAGCCGGGCCGAGCGGGGAGACGGGGGCTGCGGGGGTAGACGGGGGCTGCGGGG
GGCGACACTAA

Translation (1076 aa):
MEPGSKSVSRSDWQPEPHQRPITPLEPGPEKTPIAQPESKTLQGSNTQQKPASNQRPLTQQETPAQHDAE
SQKEPRAQQKSASQEEFLAPQKPAPQQSPYIQRVLLTQQEAASQQGPGLGKESITQQEPALRQRHVAQPG
PGPGEPPPAQQEAESTPAAQAKPGAKREPSAPTESTSQETPEQSDKQTTPVQGAKSKQGSLTELGFLTKL
QELSIQRSALEWKALSEWVTDSESESDVGSSSDTDSPATMGGMVAQGVKLGFKGKSGYKVMSGYSGTSPH
EKTSARNHRHYQDTASRLIHNMDLRTMTQSLVTLAEDNIAFFSSQGPGETAQRLSGVFAGVREQALGLEP
ALGRLLGVAHLFDLDPETPANGYRSLVHTARCCLAHLLHKSRYVASNRRSIFFRTSHNLAELEAYLAALT
QLRALVYYAQRLLVTNRPGVLFFEGDEGLTADFLREYVTLHKGCFYGRCLGFQFTPAIRPFLQTISIGLV
SFGEHYKRNETGLSVAASSLFTSGRFAIDPELRGAEFERITQNLDVHFWKAFWNITEMEVLSSLANMASA
TVRVSRLLSLPPEAFEMPLTADPTLTVTISPPLAHTGPGPVLVRLISYDLREGQDSEELSSLIKSNGQRS
LELWPRPQQAPRSRSLIVHFHGGGFVAQTSRSHEPYLKSWAQELGAPIISIDYSLAPEAPFPRALEECFF
AYCWAIKHCALLGSTGERICLAGDSAGGNLCFTVALRAAAYGVRVPDGIMAAYPATMLQPAASPSRLLSL
MDPLLPLSVLSKCVSAYAGAKTEDHSNSDQKALGMMGLVRRDTALLLRDFRLGASSWLNSFLELSGRKSQ
KMSEPIAEPMRRSVSEAALAQPQGPLGTDSLKNLTLRDLSLRGNSETSSDTPEMSLSAETLSPSTPSDVN
FLLPPEDAGEEAEAKNELSPMDRGLGVRAAFPEGFHPRRSSQGATQMPLYSSPIVKNPFMSPLLAPDSML
KSLPPVHIVACALDPMLDDSVMLARRLRNLGQPVTLRVVEDLPHGFLTLAALCRETRQAAELCVERIRLV
LTPPAGAGPSGETGAAGVDGGCGGRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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