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Report for CCDS35055.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35055.2 Public Homo sapiens 9 C9orf153 24 110 108 CCDS HistoryNCBI Gene:389766Re-query CCDS DB by CCDS ID:35055.2See the combined annotation on chromosome 9 in Sequence Viewer

Public Note for CCDS 35055.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 35055.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339137.7 ENSP00000344865.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339137.7Link to Ensembl Protein Viewer:ENSP00000344865.2Re-query CCDS DB by Nucleotide ID:ENST00000339137Re-query CCDS DB by Protein ID:ENSP00000344865
Original member Current member EBI ENST00000613665.4 ENSP00000484453.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000613665.4Link to Ensembl Protein Viewer:ENSP00000484453.1Re-query CCDS DB by Nucleotide ID:ENST00000613665Re-query CCDS DB by Protein ID:ENSP00000484453
Original member Current member NCBI NM_001276366.4 NP_001263295.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001276366.4Link to Protein Sequence:NP_001263295.1Re-query CCDS DB by Nucleotide ID:NM_001276366Re-query CCDS DB by Protein ID:NP_001263295Link to BLAST:NP_001263295.1
Original member Current member NCBI NM_001276367.4 NP_001263296.1 Accepted alive Link to Nucleotide Sequence:NM_001276367.4Link to Protein Sequence:NP_001263296.1Re-query CCDS DB by Nucleotide ID:NM_001276367Re-query CCDS DB by Protein ID:NP_001263296Link to BLAST:NP_001263296.1
Original member Current member NCBI NM_001276368.4 NP_001263297.1 Accepted alive Link to Nucleotide Sequence:NM_001276368.4Link to Protein Sequence:NP_001263297.1Re-query CCDS DB by Nucleotide ID:NM_001276368Re-query CCDS DB by Protein ID:NP_001263297Link to BLAST:NP_001263297.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001263295.1 95 Q5TBE3-2 95 100% 0 0
NP_001263296.1 95 Q5TBE3-2 95 100% 0 0
NP_001263297.1 95 Q5TBE3-2 95 100% 0 0

Chromosomal Locations for CCDS 35055.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 86221688 86221733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86227855 86228030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86229538 86229603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (288 nt):
ATGTTCCTCACTGGAGACACCAGTCCAGCTGAGGACAATAGAGAAGCCACCCTTCCTCAATGTTCACTTC
CAGAATTATATGCATGTATTGAGAATTTTAATAAGGAGAGCAAGAAATCAAATCTTCTAAAAATGCATGG
TATTTCACTTAACGAAGCACAGGAAGTACTTGCTAGAAACCTGAATGTCATGTCATTCACCAGGGGCGCT
GATGTGAGAGGAGATCTCCAACCTGTTATCAGGAAAACAATTCATGAATCTAAGGGATCTGGAATGGAGA
TATTTTAA

Translation (95 aa):
MFLTGDTSPAEDNREATLPQCSLPELYACIENFNKESKKSNLLKMHGISLNEAQEVLARNLNVMSFTRGA
DVRGDLQPVIRKTIHESKGSGMEIF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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