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Report for CCDS34548.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34548.1 Public Homo sapiens 6 SAMD5 24 110 108 CCDS HistoryNCBI Gene:389432Re-query CCDS DB by CCDS ID:34548.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34548.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367474.2 ENSP00000356444.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367474.2Link to Ensembl Protein Viewer:ENSP00000356444.1Re-query CCDS DB by Nucleotide ID:ENST00000367474Re-query CCDS DB by Protein ID:ENSP00000356444
Original member Current member NCBI NM_001030060.3 NP_001025231.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001030060.3Link to Protein Sequence:NP_001025231.1Re-query CCDS DB by Nucleotide ID:NM_001030060Re-query CCDS DB by Protein ID:NP_001025231Link to BLAST:NP_001025231.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001025231.1 173 Q5TGI4 173 100% 0 0

Chromosomal Locations for CCDS 34548.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 147508929 147509387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 147564394 147564456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGTGCACCAACATAGTTTACGAGTGGCTCAAAGCGCTGCAGCTTCCGCAGTACGCGGAGTCCTTCGTGG
ATAACGGCTACGATGACCTGGAGGTGTGCAAGCAGATCGGGGACCCGGACCTGGATGCCATCGGGGTGCT
GGCGCCCGCGCACCGCCGCCGTATCCTGGAGGCCGTGCGCCGGCTGCGGGAGCAGGACGCCAACGCCGCC
GGCCTCTACTTCACGCTTGAGCCGCAGCCGGCGCCCCCCGGGCCGCCCGCCGACGCCGTCCCCACCGGCC
GCCGGGGGGAGCCGTGCGGCGGCCCGGCCCAGGGCACCCGCGGGGACTCTCGCGGCCACACGACCGCCCC
CCGCAGCAGGGAGCTGGTGAGCTACCCCAAACTGAAGCTGAAGATCATGATCAGGGATAAGCTCGTCCGT
GACGGCATCCACCTGAGCAAGCCCCCGTACTCCCGCAAGGTCCCAATGGCTGGCATCCTAGAGTACTTAA
TGAATTGGCCGAAGTCATCACAGAGCCGCTAG

Translation (173 aa):
MCTNIVYEWLKALQLPQYAESFVDNGYDDLEVCKQIGDPDLDAIGVLAPAHRRRILEAVRRLREQDANAA
GLYFTLEPQPAPPGPPADAVPTGRRGEPCGGPAQGTRGDSRGHTTAPRSRELVSYPKLKLKIMIRDKLVR
DGIHLSKPPYSRKVPMAGILEYLMNWPKSSQSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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