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Report for CCDS28699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28699.1 Public Mus musculus 17 Cdsn 23 108 98 CCDS HistoryNCBI Gene:386463Re-query CCDS DB by CCDS ID:28699.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28699.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044804.7 ENSMUSP00000048596.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044804.7Link to Ensembl Protein Viewer:ENSMUSP00000048596.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000044804Re-query CCDS DB by Protein ID:ENSMUSP00000048596
Original member NCBI NM_001008424.2 NP_001008424.2 Updated not alive Link to Nucleotide Sequence:NM_001008424.2Link to Protein Sequence:NP_001008424.2Re-query CCDS DB by Nucleotide ID:NM_001008424Re-query CCDS DB by Protein ID:NP_001008424
Current member NCBI NM_001008424.3 NP_001008424.2 Accepted alive Link to Nucleotide Sequence:NM_001008424.3Link to Protein Sequence:NP_001008424.2Re-query CCDS DB by Nucleotide ID:NM_001008424Re-query CCDS DB by Protein ID:NP_001008424Link to BLAST:NP_001008424.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008424.2 561 Q7TPC1 561 100% 0 0

Chromosomal Locations for CCDS 28699.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 35552201 35552285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 35554661 35556261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGGTTCCTCTCGGGCACCCCGGATGGGGAGTGTGGGAGGGCACGGGCTGATGGCATTGCTGATGGCCG
GTCTTATTCTGCCAGGAATCTTGGCTAAGAGCATTGGGACCCTCTCAGACCCCTGTAAGGACCCCACGAG
GATCACCTCCCCGAATGACCCTTGTCTCATTGGAAAGACTGGCTCCAACAGCATCAGCAGCCAAGGTGGA
TCCAGCAGCTTCAGCAGCCAAGGTGGATCCAGCAGTTTCAGCAGCCATGGTGGATCCAGCAGCTCCCAGG
GAAGTTCTTCAGGATCCTTGATATATAAACCAGGAACAGGGTATTCCCAGAGTAGCTACTCTTATGGCTC
TGGCGGCTCCCGGCCAGGAGGCAGTGGCTCTCAGTCAGGAAGCAGCGGCTCTCAGTCAGGAAGCAGCGGC
TCTCAGTCAGGAAGCAGCGGCTCTCAGTCAGGAAGCAGCGGCTCCCAGTCAGGAAGCAGTGGCTCCCAGT
CAGGAAGCAGTGGCTCTCAGTCAGGAAGCAGTGGCTCCCAGTCAGGAAGCAGCGGCTCTCAGTCAGGAAG
ATGGGTAAGCAGCAGTTCTCAATGGGTAAGCAGCAGTTCTCAGTCCGGAAGTTCAGGAAGCAGTCGCGAC
AGACCCGGAAGTGGCTCTGCTCTACCAACCGGTGACAAGACATCAGGCATGTCTCAGTCTGGAGGCTCGT
CCACTTCCCAGAGCAGCAGCTCCAACCTGCGGCCCTGTAGCTCCAACGTGCCCGACTCTCCCTGCAGCGG
GGGGCCTGTCATCACACACTCGGGGCCCTACATCTCTGGCACCCACACTGTATCCGGTGGCCAGAGACCT
GTAGTGGTGGTGGTGGAGCAACATGGCTCTGGTGGCCCTGGGTTTCAAGGCATGCCCTGTAGCAATGGAG
GCCCCGCAGGTAAGCCCTGCCCTCCCATCACCTCTGTCCAGAAACCCTATGGCGGCTATGAGGTGGTGGG
TGGCTCTGCCAACAGTTATCTGGTCCCAGGCATGACCTACAGTGGGGGTAAAATCTACCCCGTGGGCTAC
TTCACCAAGGACAACCCTATCAGGGGCTCGCCAGGGGCCCCCTCCTTTGCAGCTGGGCCCCCAGTCTCTG
AGGGCAAGTACTTCTCTAGCAACCCCATCATCCCCAGCCGTGGCTCTTCCAGTTCCAGTGGCTACCCAGT
GGGCGTTGCGTTCCAGCCCGTGGGCTCTGGCGGGGTTCAGCCCTGTGGCACTGGCTCTGTCAGCTCTAAG
GGCCCTTGCTCGGGTACGAGAATTCAGATCACCTCCAGCAGCTCCAGTACCTCCTACCACCCCTGCAGCG
GTGGTCCTTCCCAGGGTCCTTGCTCCTCACCAGGCACCGGCTCCATCAGTGGGGGAAGCTCCTCCCTCTC
CTCTGGCAAAATCGTCCTTCAGCCCTGCGGCAGCAAATCTACCTCTTCGGGTTACCCCTGCCTTTCTGTT
CCCTCCTCCCCGTTGAATGGTGGTCTGAATGGCTCTCCTCAGCCTGTCCCCTCCGTGGGTGTCAAGCTCT
GTGGCCTCAACAGCCCTGGAAGAGTGCCCTGCCGTTCCATCCGCAACATTCTGACCCAAGTGAAGCCTTT
GGGACCCCAGTTAATGGATCCCAAAGTTTCTCTGCCACAGGGAGAGCCACAGGGAGAGCCACTTGAGAAG
TCTTAA

Translation (561 aa):
MGSSRAPRMGSVGGHGLMALLMAGLILPGILAKSIGTLSDPCKDPTRITSPNDPCLIGKTGSNSISSQGG
SSSFSSQGGSSSFSSHGGSSSSQGSSSGSLIYKPGTGYSQSSYSYGSGGSRPGGSGSQSGSSGSQSGSSG
SQSGSSGSQSGSSGSQSGSSGSQSGSSGSQSGSSGSQSGSSGSQSGRWVSSSSQWVSSSSQSGSSGSSRD
RPGSGSALPTGDKTSGMSQSGGSSTSQSSSSNLRPCSSNVPDSPCSGGPVITHSGPYISGTHTVSGGQRP
VVVVVEQHGSGGPGFQGMPCSNGGPAGKPCPPITSVQKPYGGYEVVGGSANSYLVPGMTYSGGKIYPVGY
FTKDNPIRGSPGAPSFAAGPPVSEGKYFSSNPIIPSRGSSSSSGYPVGVAFQPVGSGGVQPCGTGSVSSK
GPCSGTRIQITSSSSSTSYHPCSGGPSQGPCSSPGTGSISGGSSSLSSGKIVLQPCGSKSTSSGYPCLSV
PSSPLNGGLNGSPQPVPSVGVKLCGLNSPGRVPCRSIRNILTQVKPLGPQLMDPKVSLPQGEPQGEPLEK
S


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 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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