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Report for CCDS35481.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35481.1 Public Homo sapiens Y RBMY1E 24 110 108 CCDS HistoryNCBI Gene:378950Re-query CCDS DB by CCDS ID:35481.1See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35481.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382659.7 ENSP00000372105.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382659.7Link to Ensembl Protein Viewer:ENSP00000372105.2Re-query CCDS DB by Nucleotide ID:ENST00000382659Re-query CCDS DB by Protein ID:ENSP00000372105
Original member Current member NCBI NM_001006118.3 NP_001006118.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001006118.3Link to Protein Sequence:NP_001006118.2Re-query CCDS DB by Nucleotide ID:NM_001006118Re-query CCDS DB by Protein ID:NP_001006118Link to BLAST:NP_001006118.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001006118.2 496 A6NEQ0 496 100% 0 0

Chromosomal Locations for CCDS 35481.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 21903896 21904194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21904606 21904694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21904781 21904891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21905813 21905923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21906358 21906468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21906910 21907020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21907976 21908090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21910101 21910253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21912169 21912346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21915366 21915469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 21915946 21916054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGGTAGAAGCAGATCATCCTGGCAAGCTTTTCATTGGTGGCCTCAATAGAGAAACCAATGAGAAGATGC
TTAAAGCAGTATTTGGGAAACATGGTCCCATATCAGAAGTTCTTTTGATAAAGGATCGAACCAGCAAATC
CAGAGGCTTTGCATTTATTACTTTTGAGAACCCTGCAGATGCTAAGAATGCTGCCAAAGATATGAATGGA
AAGTCTTTGCATGGAAAAGCAATAAAAGTAGAACAAGCCAAGAAACCATCTTTTCAAAGTGGTGGTAGGC
GGAGACCACCAGCTTCTTCGAGAAACAGAAGCCCTTCAGGAAGTCTGAGATCTGCAAGAGGAAGCCGTGG
AGGAACAAGAGGGTGGCTTCCCTCACAAGAAGGGCACCTGGATGATGGTGGATACACTCCTGATCTCAAG
ATGAGTTATTCTAGGGGACTCATTCCAGTTAAAAGAGGTCCATCTTCAAGAAGTGGAGGTCCTCCTCCGA
AAAAATCTGCTCCTTCTGCTGTGGCAAGAAGCAATAGTTGGATGGGAAGCCAAGGTCCCATGTCACAAAG
AAGAGAGAATTATGGAGTTCCTCCACGCAGAGCGACAATATCTTCCTGGAGAAATGATCGCATGTCAACA
AGACATGATGGTTATGCAACTAACGATGGAAATCATCCAAGTTGCCAAGAAACGAGGGATTATGCTCCAC
CATCTAGAGGCTATGCATACCGTGATAATGGTCATTCTAATCGGGATGAACATTCCTCTAGAGGATATAG
AAATCATCGAAGTTCCCGAGAAACTAGGGATTATGCTCCACCATCTAGAGGCCATGCATACCGTGATTAT
GGTCATTCTCGTCGGGATGAAAGTTATTCTAGAGGATACAGAAATCGTCGAAGTTCCCGAGAAACTAGGG
AGTATGCTCCACCATCTAGAGGCCATGGATACCGTGATTATGGTCATTCTCGTCGACATGAAAGTTATTC
TAGAGGATATAGAAATCATCCAAGTTCCCGAGAAACCAGGGATTATGCTCCACCACATAGAGACTATGCA
TACCGTGATTATGGTCATTCTAGTTGGGATGAACATTCCTCTAGAGGATATAGTTATCATGATGGCTACG
GTGAGGCCCTTGGTAGAGATCATTCTGAACATCTAAGTGGAAGTTCTTATAGAGATGCACTTCAGAGATA
CGGGACCGCTCATGGTGCACCACCTGCAAGAGGGCCTCGGATGTCCTATGGTGGAAGCACCTGCCACGCA
TATAGTAATACACGAGATAGATATGGCAGAAGTTGGGAGAGTTACTCGAGCTGTGGTGATTTTCATTATT
GTGATCGTGAGCATGTTTGCAGAAAAGACCAAAGGAATCCGCCTTCTCTGGGTAGGGTGCTCCCTGATCC
TCGTGAAGCATGTGGTAGCTCAAGTTATGTGGCATCTATAGTAGATGGTGGGGAGAGTCGATCTGAAAAA
GGAGACTCGAGCAGATATTAA

Translation (496 aa):
MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNG
KSLHGKAIKVEQAKKPSFQSGGRRRPPASSRNRSPSGSLRSARGSRGGTRGWLPSQEGHLDDGGYTPDLK
MSYSRGLIPVKRGPSSRSGGPPPKKSAPSAVARSNSWMGSQGPMSQRRENYGVPPRRATISSWRNDRMST
RHDGYATNDGNHPSCQETRDYAPPSRGYAYRDNGHSNRDEHSSRGYRNHRSSRETRDYAPPSRGHAYRDY
GHSRRDESYSRGYRNRRSSRETREYAPPSRGHGYRDYGHSRRHESYSRGYRNHPSSRETRDYAPPHRDYA
YRDYGHSSWDEHSSRGYSYHDGYGEALGRDHSEHLSGSSYRDALQRYGTAHGAPPARGPRMSYGGSTCHA
YSNTRDRYGRSWESYSSCGDFHYCDREHVCRKDQRNPPSLGRVLPDPREACGSSSYVASIVDGGESRSEK
GDSSRY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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