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Report for CCDS36811.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36811.1 Public Mus musculus 14 Nr1d2 23 108 98 CCDS HistoryNCBI Gene:353187Re-query CCDS DB by CCDS ID:36811.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36811.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090543.5 ENSMUSP00000088031.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090543.5Link to Ensembl Protein Viewer:ENSMUSP00000088031.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090543Re-query CCDS DB by Protein ID:ENSMUSP00000088031
Original member NCBI NM_011584.4 NP_035714.3 Updated not alive Link to Nucleotide Sequence:NM_011584.4Link to Protein Sequence:NP_035714.3Re-query CCDS DB by Nucleotide ID:NM_011584Re-query CCDS DB by Protein ID:NP_035714
Current member NCBI NM_011584.5 NP_035714.3 Accepted alive Link to Nucleotide Sequence:NM_011584.5Link to Protein Sequence:NP_035714.3Re-query CCDS DB by Nucleotide ID:NM_011584Re-query CCDS DB by Protein ID:NP_035714Link to BLAST:NP_035714.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035714.3 576 Q60674 576 100% 0 0

Chromosomal Locations for CCDS 36811.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 18206685 18206881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18207919 18208129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18211779 18211964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18214874 18215493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18216650 18216794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18219968 18220056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18221987 18222253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 18238811 18238826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1731 nt):
ATGGAGCTGAACGCAGGAGGTGTGATTGCCTACATCAGTTCCTCTAGCTCTGCCTCCAGCCCTGCCTCTT
GTCACAGTGAGGGTTCTGAGAATAGCTTCCAGTCCTCGTCCTCGTCTGTTCCATCTTCTCCAAATAGCTC
TAACTGTGATGCCAACGGCAATCCCAAGAACGCTGATATCTCTAGCATCGATGGTGTTCTGAAGAGTGAC
CGCACAGATTGTCCTGTGAAAACAGGCAAAACCAGTGCTCCTGGCATGACTAAGAGTCACAGTGGAATGA
CAAAATTTAGTGGCATGGTTCTACTGTGTAAAGTCTGTGGGGATGTGGCATCAGGATTCCACTATGGAGT
TCATGCTTGTGAAGGCTGTAAGGGTTTCTTTCGGAGGAGCATTCAGCAAAACATCCAGTATAAGAAGTGC
CTGAAGAATGAGAACTGTTCCATCATGAGGATGAACAGGAACCGGTGCCAGCAGTGCCGCTTTAAGAAGT
GTCTGTCTGTGGGGATGTCACGAGATGCTGTTCGATTTGGCCGAATTCCTAAGCGTGAAAAACAGAGAAT
GCTAATTGAAATGCAAAGTGCAATGAAGACCATGATGAACACCCAGTTCAGTGGCCACCTGCAGAATGAC
ACCTTAGCAGAACAGCATGATCAGTCAGCACTACCAGCTCAGGAACAGCTGCGGCCCAAGTCCCAGCTGG
AGCAAGAAAACATCAAAAACACTCCTTCTGATTTTGCAAAGGAGGAAGTGATTGGTATGGTGACCAGAGC
CCACAAGGATACCTTTCTGTATAATCAGGAACATCGAGAAAACTCATCTGAGAGCATGCCACCTCAGAGA
GGAGAACGGATTCCCAGGAACATGGAGCAATATAATTTAAATCAAGACCATCGTGGCAGTGGGATTCACA
ACCACTTCCCCTGTAGTGAGAGGCAGCAACATCTCAGTGGACAGTACAAAGGGAGGAACATAATGCATTA
CCCAAACGGCCATGCCGTTTGTATTGCAAATGGACACTGTATGAACTTCTCCAGTGCTTATACTCAAAGA
GTCTGTGATAGAATTCCAGTAGGTGGATGTTCTCAGACTGAGAACAGAAATAGTTACCTGTGCAACACTG
GAGGGAGGATGCATCTGGTGTGTCCTATGAGCAAGTCTCCATATGTGGACCCTCAGAAGTCTGGACATGA
AATCTGGGAAGAATTTTCAATGAGTTTTACCCCAGCAGTAAAAGAGGTGGTGGAATTTGCAAAGAGGATT
CCTGGCTTCCGAGATCTGTCTCAGCATGATCAGGTCAATCTGTTAAAAGCTGGGACTTTTGAGGTTTTAA
TGGTACGATTTGCTTCATTATTTGATGCAAAGGAACGGACTGTCACCTTTCTAAGTGGTAAGAAGTACAG
TGTGGATGACCTGCACTCAATGGGAGCAGGGGATCTGCTCAGCTCTATGTTTGAGTTCAGTGAGAAGCTG
AATGCCCTCCAGCTCAGTGATGAGGAAATGAGCTTGTTCACAGCAGTTGTTCTGGTATCTGCAGATCGAT
CTGGAATTGAAAATGTCAACTCAGTGGAGGCTTTGCAGGAAACACTCATCCGTGCACTAAGGACCTTAAT
AATGAAAAACCATCCAAATGAGGCCTCCATTTTTACAAAATTACTTCTAAAGTTGCCAGATCTTCGATCT
TTAAACAACATGCACTCTGAGGAACTCTTGGCCTTTAAAGTTCATCCTTAA

Translation (576 aa):
MELNAGGVIAYISSSSSASSPASCHSEGSENSFQSSSSSVPSSPNSSNCDANGNPKNADISSIDGVLKSD
RTDCPVKTGKTSAPGMTKSHSGMTKFSGMVLLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKC
LKNENCSIMRMNRNRCQQCRFKKCLSVGMSRDAVRFGRIPKREKQRMLIEMQSAMKTMMNTQFSGHLQND
TLAEQHDQSALPAQEQLRPKSQLEQENIKNTPSDFAKEEVIGMVTRAHKDTFLYNQEHRENSSESMPPQR
GERIPRNMEQYNLNQDHRGSGIHNHFPCSERQQHLSGQYKGRNIMHYPNGHAVCIANGHCMNFSSAYTQR
VCDRIPVGGCSQTENRNSYLCNTGGRMHLVCPMSKSPYVDPQKSGHEIWEEFSMSFTPAVKEVVEFAKRI
PGFRDLSQHDQVNLLKAGTFEVLMVRFASLFDAKERTVTFLSGKKYSVDDLHSMGAGDLLSSMFEFSEKL
NALQLSDEEMSLFTAVVLVSADRSGIENVNSVEALQETLIRALRTLIMKNHPNEASIFTKLLLKLPDLRS
LNNMHSEELLAFKVHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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