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Report for CCDS43514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43514.1 Public Homo sapiens 6 RAET1G 24 110 108 CCDS HistoryNCBI Gene:353091Re-query CCDS DB by CCDS ID:43514.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43514.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367360.7 ENSP00000356329.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367360.7Link to Ensembl Protein Viewer:ENSP00000356329.2Re-query CCDS DB by Nucleotide ID:ENST00000367360Re-query CCDS DB by Protein ID:ENSP00000356329
Original member Current member NCBI NM_001001788.4 NP_001001788.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001788.4Link to Protein Sequence:NP_001001788.2Re-query CCDS DB by Nucleotide ID:NM_001001788Re-query CCDS DB by Protein ID:NP_001001788Link to BLAST:NP_001001788.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001788.2 334 Q6H3X3-1 334 100% 0 0

Chromosomal Locations for CCDS 43514.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 149916912 149917074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149918174 149918384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149919043 149919324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149919553 149919816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 149922926 149923010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1005 nt):
ATGGCAGCGGCCGCCAGCCCCGCGTTCCTTCTACGCCTCCCGCTTCTGCTCCTGCTGTCCAGCTGGTGCA
GGACCGGGCTGGCCGACCCTCACTCTCTTTGCTATGACATCACCGTCATCCCTAAGTTCAGACCTGGACC
ACGGTGGTGTGCGGTTCAAGGCCAGGTGGATGAAAAGACTTTTCTTCACTATGACTGTGGCAGCAAGACA
GTCACACCCGTCAGTCCCCTGGGGAAGAAACTAAATGTCACAACGGCCTGGAAAGCACAGAACCCAGTAC
TGAGAGAGGTGGTGGACATACTTACAGAGCAACTGCTTGACATTCAGCTGGAGAATTACATACCCAAGGA
ACCCCTCACCCTGCAGGCCAGGATGTCTTGTGAGCAGAAAGCCGAAGGACACGGCAGTGGATCTTGGCAG
CTCAGTTTCGATGGACAGATCTTCCTCCTCTTTGACTCAGAAAACAGAATGTGGACAACGGTTCATCCTG
GAGCCAGAAAGATGAAAGAAAAGTGGGAGAATGACAAGGATATGACCATGTCCTTCCATTACATCTCAAT
GGGAGACTGCACAGGATGGCTTGAGGACTTCTTGATGGGCATGGACAGCACCCTGGAGCCAAGTGCAGGA
GCACCACCCACCATGTCCTCAGGCACAGCCCAACCCAGGGCCACGGCCACCACCCTCATCCTTTGCTGCC
TCCTCATCATGTGTCTCCTCATATGCTCCAGGCACAGTCTGACCCAAAGCCATGGCCACCACCCTCAGTC
CCTGCAGCCTCCTCCTCATCCTCCCCTGCTTCATCCTACCTGGCTGCTGAGGAGAGTCCTTTGGAGTGAC
AGCTACCAAATAGCGAAGCGCCCCTTGTCTGGTGGACACGTGACTCGCGTGACTTTACCTATCATTGGAG
ACGACTCACACTCCTTACCCTGCCCTCTTGCCTTGTATACAATAAATAACGGCGCAGCCAGGTATTCGGA
GCCACTACAGGTCTCCATATCTTGA

Translation (334 aa):
MAAAASPAFLLRLPLLLLLSSWCRTGLADPHSLCYDITVIPKFRPGPRWCAVQGQVDEKTFLHYDCGSKT
VTPVSPLGKKLNVTTAWKAQNPVLREVVDILTEQLLDIQLENYIPKEPLTLQARMSCEQKAEGHGSGSWQ
LSFDGQIFLLFDSENRMWTTVHPGARKMKEKWENDKDMTMSFHYISMGDCTGWLEDFLMGMDSTLEPSAG
APPTMSSGTAQPRATATTLILCCLLIMCLLICSRHSLTQSHGHHPQSLQPPPHPPLLHPTWLLRRVLWSD
SYQIAKRPLSGGHVTRVTLPIIGDDSHSLPCPLALYTINNGAARYSEPLQVSIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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