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Report for CCDS42364.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42364.2 Public Homo sapiens 17 C17orf67 24 110 108 CCDS HistoryNCBI Gene:339210Re-query CCDS DB by CCDS ID:42364.2See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 42364.2
The coding region has been updated to shorten the N-terminus to one that is more supported by the available protein and conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 42364.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397861.7 ENSP00000380959.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397861.7Link to Ensembl Protein Viewer:ENSP00000380959.2Re-query CCDS DB by Nucleotide ID:ENST00000397861Re-query CCDS DB by Protein ID:ENSP00000380959
Original member Current member NCBI NM_001085430.4 NP_001078899.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001085430.4Link to Protein Sequence:NP_001078899.2Re-query CCDS DB by Nucleotide ID:NM_001085430Re-query CCDS DB by Protein ID:NP_001078899Link to BLAST:NP_001078899.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001078899.2 90 Q0P5P2 90 100% 0 0

Chromosomal Locations for CCDS 42364.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 56795064 56795180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56814869 56814969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 56815756 56815810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (273 nt):
ATGAAGACATTGCCTGTGCTCGTGCTGTCTCTTACCTTACTGACTGTCTTCTCAGAGACCTCCCCGATTT
TGACAGAGAAGCAGGCCAAACAGCTCCTAAGATCTCGGCGACAGGATAGACCAAGCAAACCCGGATTCCC
CGATGAGCCAATGCGGGAATACATGCACCACCTGCTCGCCCTGGAGCATCGCGCTGAGGAGCAGTTCCTG
GAGCACTGGCTGAACCCTCACTGCAAACCCCACTGTGACAGGAACAGGATTCATCCTGTGTAA

Translation (90 aa):
MKTLPVLVLSLTLLTVFSETSPILTEKQAKQLLRSRRQDRPSKPGFPDEPMREYMHHLLALEHRAEEQFL
EHWLNPHCKPHCDRNRIHPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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